JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RCAN3_chr1_24497836_24546040	0/0	t0026	6136	1	1	0	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0027	6137	1	1	0	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0028	6136	1	1	0	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0029	6138	1	1	0	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0030	6138	1	0	0	1	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0031	6138	1	0	0	1	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0032	6138	1	0	0	1	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0033	6137	1	0	0	0	0	1	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0034	6134	1	1	0	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0035	6136	1	1	0	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0036	6139	1	0	1	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	1/0	t0037	6138	1	0	0	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0038	6137	1	0	1	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0039	6137	1	0	1	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0040	6137	1	0	0	0	1	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0041	6133	1	1	0	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0042	6137	1	0	1	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0043	6138	1	0	0	1	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0044	6138	1	0	0	1	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0045	6138	1	1	0	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0046	6137	1	1	0	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0047	6139	1	1	0	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0048	6139	1	1	0	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0049	6128	1	1	0	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0050	6137	1	1	0	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0051	6138	1	1	0	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0052	6139	1	1	0	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCBTB1_chr13_49526946_49590558	0/1	t0001	2403	143	12	32	74	9	15	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	t0002	2413	86	24	13	37	0	12	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	1/0	t0003	2413	72	20	16	23	6	6	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	t0004	2413	59	1	3	47	1	7	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	t0005	2398	14	0	0	14	0	0	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	t0006	2413	11	11	0	0	0	0	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	t0007	2403	11	10	1	0	0	0	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	t0008	2403	10	9	1	0	0	0	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	t0009	2413	3	1	2	0	0	0	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	t0010	2413	2	2	0	0	0	0	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	t0011	2413	2	2	0	0	0	0	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	t0012	2413	1	1	0	0	0	0	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	t0013	2403	1	1	0	0	0	0	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	t0014	2403	1	1	0	0	0	0	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	t0015	2413	1	1	0	0	0	0	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	t0016	2397	1	0	0	1	0	0	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB2_chr13_48483963_48538080	1/1	t0001	1420	269	56	48	127	8	28	copy fasta	RCBTB2	chr13	48483963	48538080
RCBTB2_chr13_48483963_48538080	0/0	t0002	1420	24	21	3	0	0	0	copy fasta	RCBTB2	chr13	48483963	48538080
RCBTB2_chr13_48483963_48538080	0/0	t0003	1420	7	5	2	0	0	0	copy fasta	RCBTB2	chr13	48483963	48538080
RCBTB2_chr13_48483963_48538080	0/0	t0004	1420	5	5	0	0	0	0	copy fasta	RCBTB2	chr13	48483963	48538080
RCBTB2_chr13_48483963_48538080	0/0	t0005	1420	4	0	0	4	0	0	copy fasta	RCBTB2	chr13	48483963	48538080
RCBTB2_chr13_48483963_48538080	0/0	t0006	1420	2	2	0	0	0	0	copy fasta	RCBTB2	chr13	48483963	48538080
RCBTB2_chr13_48483963_48538080	0/0	t0007	1420	1	0	0	0	0	1	copy fasta	RCBTB2	chr13	48483963	48538080