JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RCBTB2_chr13_48483963_48538080	0/0	t0008	1420	1	1	0	0	0	0	copy fasta	RCBTB2	chr13	48483963	48538080
RCBTB2_chr13_48483963_48538080	0/0	t0009	1420	1	0	1	0	0	0	copy fasta	RCBTB2	chr13	48483963	48538080
RCBTB2_chr13_48483963_48538080	0/0	t0010	1420	1	0	0	1	0	0	copy fasta	RCBTB2	chr13	48483963	48538080
RCBTB2_chr13_48483963_48538080	0/0	t0011	1420	1	0	0	1	0	0	copy fasta	RCBTB2	chr13	48483963	48538080
RCBTB2_chr13_48483963_48538080	0/0	t0012	1420	1	0	0	0	0	1	copy fasta	RCBTB2	chr13	48483963	48538080
RCBTB2_chr13_48483963_48538080	0/0	t0013	1420	1	1	0	0	0	0	copy fasta	RCBTB2	chr13	48483963	48538080
RCBTB2_chr13_48483963_48538080	0/0	t0014	1420	1	1	0	0	0	0	copy fasta	RCBTB2	chr13	48483963	48538080
RCBTB2_chr13_48483963_48538080	0/0	t0015	1420	1	0	0	1	0	0	copy fasta	RCBTB2	chr13	48483963	48538080
RCC1L_chr7_75037183_75078802	1/0	t0001	915	135	58	31	20	7	18	copy fasta	RCC1L	chr7	75037183	75078802
RCC1L_chr7_75037183_75078802	0/1	t0002	915	129	24	28	43	9	24	copy fasta	RCC1L	chr7	75037183	75078802
RCC1L_chr7_75037183_75078802	0/0	t0003	915	2	0	0	2	0	0	copy fasta	RCC1L	chr7	75037183	75078802
RCC1L_chr7_75037183_75078802	0/0	t0004	915	1	0	0	1	0	0	copy fasta	RCC1L	chr7	75037183	75078802
RCC1L_chr7_75037183_75078802	0/0	t0005	915	1	0	1	0	0	0	copy fasta	RCC1L	chr7	75037183	75078802
RCC1L_chr7_75037183_75078802	0/0	t0006	915	1	1	0	0	0	0	copy fasta	RCC1L	chr7	75037183	75078802
RCC1L_chr7_75037183_75078802	0/0	t0007	915	1	1	0	0	0	0	copy fasta	RCC1L	chr7	75037183	75078802
RCC1_chr1_28501043_28543989	1/1	t0001	1286	226	49	49	83	16	27	copy fasta	RCC1	chr1	28501043	28543989
RCC1_chr1_28501043_28543989	0/0	t0002	1286	36	29	5	0	1	1	copy fasta	RCC1	chr1	28501043	28543989
RCC1_chr1_28501043_28543989	0/0	t0003	1286	10	1	5	0	1	3	copy fasta	RCC1	chr1	28501043	28543989
RCC1_chr1_28501043_28543989	0/0	t0004	1286	7	6	1	0	0	0	copy fasta	RCC1	chr1	28501043	28543989
RCC1_chr1_28501043_28543989	0/0	t0005	1286	4	0	3	1	0	0	copy fasta	RCC1	chr1	28501043	28543989
RCC1_chr1_28501043_28543989	0/0	t0006	1253	3	0	2	0	0	1	copy fasta	RCC1	chr1	28501043	28543989
RCC1_chr1_28501043_28543989	0/0	t0007	1284	3	2	1	0	0	0	copy fasta	RCC1	chr1	28501043	28543989
RCC1_chr1_28501043_28543989	0/0	t0008	1286	1	0	0	0	0	1	copy fasta	RCC1	chr1	28501043	28543989
RCC1_chr1_28501043_28543989	0/0	t0009	1286	1	0	1	0	0	0	copy fasta	RCC1	chr1	28501043	28543989
RCC1_chr1_28501043_28543989	0/0	t0010	1286	1	0	1	0	0	0	copy fasta	RCC1	chr1	28501043	28543989
RCC1_chr1_28501043_28543989	0/0	t0011	1286	1	0	0	0	0	1	copy fasta	RCC1	chr1	28501043	28543989
RCC1_chr1_28501043_28543989	0/0	t0012	1286	1	1	0	0	0	0	copy fasta	RCC1	chr1	28501043	28543989
RCC2_chr1_17401760_17444677	1/1	t0001	2472	128	25	22	61	4	14	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0002	2469	84	25	22	24	3	10	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0003	2469	56	2	0	49	1	4	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0004	2469	47	12	11	14	2	8	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0005	2469	15	3	7	0	0	5	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0006	2470	8	6	2	0	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0007	2466	7	2	1	4	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0008	2469	6	6	0	0	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0009	2473	5	3	2	0	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0010	2468	3	0	1	2	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0011	2469	3	0	2	0	1	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0012	2468	2	1	0	1	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0013	2468	2	1	1	0	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0014	2469	2	0	0	0	0	2	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0015	2470	2	1	1	0	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0016	2472	1	0	0	0	0	1	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0017	2468	1	1	0	0	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0018	2471	1	0	0	1	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0019	2471	1	0	1	0	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0020	2468	1	0	1	0	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0021	2462	1	0	1	0	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0022	2472	1	1	0	0	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0023	2472	1	0	0	1	0	0	copy fasta	RCC2	chr1	17401760	17444677