JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RCC2_chr1_17401760_17444677	0/0	t0024	2472	1	0	0	0	1	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0025	2469	1	0	0	1	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0026	2469	1	0	0	1	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0027	2469	1	1	0	0	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0028	2469	1	1	0	0	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0029	2469	1	1	0	0	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0030	2472	1	0	0	1	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0031	2469	1	1	0	0	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0032	2472	1	0	0	0	0	1	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0033	2469	1	1	0	0	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0034	2469	1	0	1	0	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	t0035	2472	1	0	0	0	0	1	copy fasta	RCC2	chr1	17401760	17444677
RCCD1_chr15_90949884_90968125	0/0	t0001	1545	137	34	11	80	0	12	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	t0002	1545	125	10	27	83	0	5	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	1/1	t0003	1545	58	5	22	0	13	16	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	t0004	1545	26	6	0	20	0	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	t0005	1545	14	0	3	0	2	9	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	t0006	1545	9	5	0	2	0	2	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	t0007	1545	8	6	2	0	0	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	t0008	1545	6	6	0	0	0	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	t0009	1545	6	3	2	0	1	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	t0010	1545	5	0	5	0	0	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	t0011	1545	5	5	0	0	0	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	t0012	1545	5	0	4	1	0	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	t0013	1543	5	5	0	0	0	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	t0014	1539	5	5	0	0	0	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	t0015	1545	3	3	0	0	0	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	t0016	1545	2	2	0	0	0	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	t0017	1545	2	0	0	2	0	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	t0018	1545	2	1	0	1	0	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	t0019	1545	1	0	0	0	0	1	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	t0020	1545	1	0	1	0	0	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	t0021	1545	1	1	0	0	0	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	t0022	1545	1	0	0	1	0	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	t0023	1545	1	1	0	0	0	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	t0024	1545	1	1	0	0	0	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	t0025	1545	1	1	0	0	0	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	t0026	1545	1	0	1	0	0	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	t0027	1545	1	0	0	0	0	1	copy fasta	RCCD1	chr15	90949884	90968125
RCE1_chr11_66838441_66851552	1/1	t0001	473	404	84	71	187	14	46	copy fasta	RCE1	chr11	66838441	66851552
RCE1_chr11_66838441_66851552	0/0	t0002	473	6	5	1	0	0	0	copy fasta	RCE1	chr11	66838441	66851552
RCE1_chr11_66838441_66851552	0/0	t0003	473	1	1	0	0	0	0	copy fasta	RCE1	chr11	66838441	66851552
RCE1_chr11_66838441_66851552	0/0	t0004	473	1	0	0	1	0	0	copy fasta	RCE1	chr11	66838441	66851552
RCHY1_chr4_75474033_75519403	0/0	t0001	3629	126	13	25	71	4	13	copy fasta	RCHY1	chr4	75474033	75519403
RCHY1_chr4_75474033_75519403	1/1	t0002	3623	94	1	15	58	5	13	copy fasta	RCHY1	chr4	75474033	75519403
RCHY1_chr4_75474033_75519403	0/0	t0003	3629	75	18	7	38	2	10	copy fasta	RCHY1	chr4	75474033	75519403
RCHY1_chr4_75474033_75519403	0/0	t0004	3629	39	15	6	17	1	0	copy fasta	RCHY1	chr4	75474033	75519403
RCHY1_chr4_75474033_75519403	0/0	t0005	3629	11	11	0	0	0	0	copy fasta	RCHY1	chr4	75474033	75519403
RCHY1_chr4_75474033_75519403	0/0	t0006	3629	9	9	0	0	0	0	copy fasta	RCHY1	chr4	75474033	75519403
RCHY1_chr4_75474033_75519403	0/0	t0007	3623	8	8	0	0	0	0	copy fasta	RCHY1	chr4	75474033	75519403