JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RCHY1_chr4_75474033_75519403	0/0	t0008	3629	6	0	0	6	0	0	copy fasta	RCHY1	chr4	75474033	75519403
RCHY1_chr4_75474033_75519403	0/0	t0009	3627	4	0	1	1	2	0	copy fasta	RCHY1	chr4	75474033	75519403
RCHY1_chr4_75474033_75519403	0/0	t0010	3623	4	0	4	0	0	0	copy fasta	RCHY1	chr4	75474033	75519403
RCHY1_chr4_75474033_75519403	0/0	t0011	3618	3	0	3	0	0	0	copy fasta	RCHY1	chr4	75474033	75519403
RCHY1_chr4_75474033_75519403	0/0	t0012	3623	3	0	3	0	0	0	copy fasta	RCHY1	chr4	75474033	75519403
RCHY1_chr4_75474033_75519403	0/0	t0013	3629	3	3	0	0	0	0	copy fasta	RCHY1	chr4	75474033	75519403
RCHY1_chr4_75474033_75519403	0/0	t0014	3627	2	0	1	0	0	1	copy fasta	RCHY1	chr4	75474033	75519403
RCHY1_chr4_75474033_75519403	0/0	t0015	3629	2	2	0	0	0	0	copy fasta	RCHY1	chr4	75474033	75519403
RCHY1_chr4_75474033_75519403	0/0	t0016	3629	2	0	2	0	0	0	copy fasta	RCHY1	chr4	75474033	75519403
RCHY1_chr4_75474033_75519403	0/0	t0017	3623	1	0	0	1	0	0	copy fasta	RCHY1	chr4	75474033	75519403
RCHY1_chr4_75474033_75519403	0/0	t0018	3623	1	1	0	0	0	0	copy fasta	RCHY1	chr4	75474033	75519403
RCHY1_chr4_75474033_75519403	0/0	t0019	3629	1	0	1	0	0	0	copy fasta	RCHY1	chr4	75474033	75519403
RCHY1_chr4_75474033_75519403	0/0	t0020	3629	1	1	0	0	0	0	copy fasta	RCHY1	chr4	75474033	75519403
RCHY1_chr4_75474033_75519403	0/0	t0021	3629	1	0	0	1	0	0	copy fasta	RCHY1	chr4	75474033	75519403
RCHY1_chr4_75474033_75519403	0/0	t0022	3629	1	1	0	0	0	0	copy fasta	RCHY1	chr4	75474033	75519403
RCHY1_chr4_75474033_75519403	0/0	t0023	3623	1	0	0	0	0	1	copy fasta	RCHY1	chr4	75474033	75519403
RCHY1_chr4_75474033_75519403	0/0	t0024	3629	1	1	0	0	0	0	copy fasta	RCHY1	chr4	75474033	75519403
RCHY1_chr4_75474033_75519403	0/0	t0025	3629	1	0	0	1	0	0	copy fasta	RCHY1	chr4	75474033	75519403
RCHY1_chr4_75474033_75519403	0/0	t0026	3629	1	1	0	0	0	0	copy fasta	RCHY1	chr4	75474033	75519403
RCHY1_chr4_75474033_75519403	0/0	t0027	3629	1	1	0	0	0	0	copy fasta	RCHY1	chr4	75474033	75519403
RCHY1_chr4_75474033_75519403	0/0	t0028	3629	1	0	0	1	0	0	copy fasta	RCHY1	chr4	75474033	75519403
RCHY1_chr4_75474033_75519403	0/0	t0029	3629	1	1	0	0	0	0	copy fasta	RCHY1	chr4	75474033	75519403
RCHY1_chr4_75474033_75519403	0/0	t0030	3629	1	1	0	0	0	0	copy fasta	RCHY1	chr4	75474033	75519403
RCHY1_chr4_75474033_75519403	0/0	t0031	3629	1	0	0	1	0	0	copy fasta	RCHY1	chr4	75474033	75519403
RCL1_chr9_4787944_4866066	0/0	t0001	941	115	34	11	60	2	8	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/1	t0002	940	95	16	21	31	9	17	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0003	941	51	7	17	22	2	3	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0004	940	14	3	4	4	0	3	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	1/0	t0005	940	13	1	4	1	1	5	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0006	940	13	0	1	10	0	2	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0007	941	10	0	5	5	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0008	941	10	10	0	0	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0009	941	8	0	0	8	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0010	940	8	0	0	6	0	2	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0011	941	5	2	2	0	0	1	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0012	940	4	3	1	0	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0013	941	4	4	0	0	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0014	941	4	3	1	0	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0015	941	3	1	0	0	2	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0016	941	3	0	0	2	0	1	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0017	940	3	0	0	3	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0018	941	2	2	0	0	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0019	941	2	0	0	2	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0020	941	2	2	0	0	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0021	940	2	0	0	2	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0022	940	1	0	0	1	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0023	941	1	1	0	0	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0024	941	1	0	0	1	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0025	941	1	1	0	0	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0026	941	1	1	0	0	0	0	copy fasta	RCL1	chr9	4787944	4866066