JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RCL1_chr9_4787944_4866066	0/0	t0027	941	1	1	0	0	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0028	941	1	1	0	0	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0029	940	1	0	0	1	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0030	941	1	1	0	0	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0031	941	1	1	0	0	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0032	941	1	0	0	0	0	1	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0033	941	1	0	0	1	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0034	941	1	0	0	0	0	1	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0035	940	1	0	1	0	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	t0036	940	1	1	0	0	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCN1_chr11_32086074_32110722	0/1	t0001	1374	258	22	41	164	9	21	copy fasta	RCN1	chr11	32086074	32110722
RCN1_chr11_32086074_32110722	1/0	t0002	1374	82	31	29	5	7	9	copy fasta	RCN1	chr11	32086074	32110722
RCN1_chr11_32086074_32110722	0/0	t0003	1374	18	15	1	0	0	2	copy fasta	RCN1	chr11	32086074	32110722
RCN1_chr11_32086074_32110722	0/0	t0004	1374	16	16	0	0	0	0	copy fasta	RCN1	chr11	32086074	32110722
RCN1_chr11_32086074_32110722	0/0	t0005	1374	11	0	0	7	0	4	copy fasta	RCN1	chr11	32086074	32110722
RCN1_chr11_32086074_32110722	0/0	t0006	1374	7	6	1	0	0	0	copy fasta	RCN1	chr11	32086074	32110722
RCN1_chr11_32086074_32110722	0/0	t0007	1374	4	0	0	4	0	0	copy fasta	RCN1	chr11	32086074	32110722
RCN1_chr11_32086074_32110722	0/0	t0008	1374	2	2	0	0	0	0	copy fasta	RCN1	chr11	32086074	32110722
RCN1_chr11_32086074_32110722	0/0	t0009	1374	1	0	0	0	0	1	copy fasta	RCN1	chr11	32086074	32110722
RCN1_chr11_32086074_32110722	0/0	t0010	1374	1	1	0	0	0	0	copy fasta	RCN1	chr11	32086074	32110722
RCN1_chr11_32086074_32110722	0/0	t0011	1374	1	1	0	0	0	0	copy fasta	RCN1	chr11	32086074	32110722
RCN1_chr11_32086074_32110722	0/0	t0012	1374	1	0	0	0	0	1	copy fasta	RCN1	chr11	32086074	32110722
RCN1_chr11_32086074_32110722	0/0	t0013	1374	1	0	0	0	0	1	copy fasta	RCN1	chr11	32086074	32110722
RCN1_chr11_32086074_32110722	0/0	t0014	1374	1	0	0	0	0	1	copy fasta	RCN1	chr11	32086074	32110722
RCN2_chr15_76926749_76959393	0/0	t0001	5252	33	0	4	23	2	4	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0002	5243	9	0	1	8	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0003	5252	7	0	3	3	0	1	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0004	5223	7	0	1	6	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0005	5222	6	0	0	5	0	1	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0006	5261	5	5	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0007	5221	5	5	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0008	5240	5	1	1	2	0	1	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0009	5258	4	0	1	3	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0010	5255	4	0	1	3	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0011	5256	4	0	1	2	0	1	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0012	5264	4	4	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0013	5242	4	0	0	4	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0014	5242	4	0	0	4	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0015	5265	3	0	0	1	1	1	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0016	5262	3	0	1	2	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0017	5259	3	0	1	1	0	1	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0018	5257	3	0	0	3	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0019	5254	3	0	0	3	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0020	5257	3	0	1	2	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0021	5235	3	0	0	3	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0022	5249	3	3	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0023	5223	3	0	0	3	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0024	5245	3	0	1	1	1	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0025	5240	3	1	0	2	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0026	5242	3	0	3	0	0	0	copy fasta	RCN2	chr15	76926749	76959393