JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RCN2_chr15_76926749_76959393	0/0	t0077	5248	1	0	1	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0078	5922	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0079	5243	1	0	1	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0080	5230	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0081	5263	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0082	5263	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0083	5266	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0084	5249	1	0	0	0	0	1	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0085	5260	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0086	5254	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0087	5249	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0088	5246	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0089	5239	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0090	5232	1	0	0	0	0	1	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0091	5255	1	0	0	0	1	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0092	5248	1	0	1	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0093	5250	1	0	0	0	1	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0094	5249	1	0	1	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0095	5249	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0096	5258	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0097	5236	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0098	5243	1	0	0	0	0	1	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0099	5247	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0100	5248	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0101	5248	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0102	5230	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0103	5269	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0104	5270	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0105	5266	1	0	1	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0106	5268	1	0	0	0	0	1	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0107	5264	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0108	5268	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0109	5269	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0110	5263	1	0	1	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0111	5267	1	0	0	0	0	1	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0112	5268	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0113	5257	1	0	1	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0114	5255	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0115	5256	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0116	5257	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0117	5258	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0118	5259	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0119	5257	1	0	1	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0120	5260	1	0	0	0	0	1	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0121	5262	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0122	5252	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0123	5253	1	0	0	0	1	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0124	5255	1	0	0	0	0	1	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0125	5256	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0126	5260	1	0	0	0	0	1	copy fasta	RCN2	chr15	76926749	76959393