JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RCN2_chr15_76926749_76959393	0/0	t0177	5234	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0178	5224	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0179	5225	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0180	5221	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0181	5233	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0182	5223	1	0	1	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0183	5224	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0184	5222	1	0	1	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0185	5225	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0186	5265	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0187	5253	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0188	5243	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0189	5243	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0190	5254	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0191	5229	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0192	5229	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0193	5253	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/1	t0194	5261	1	0	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0195	5239	1	0	0	0	1	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0196	5241	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0197	5241	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0198	5242	1	0	1	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0199	5246	1	0	1	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0200	5254	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0201	5246	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0202	5248	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0203	5249	1	0	0	0	0	1	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0204	5240	1	0	0	0	0	1	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0205	5243	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0206	5244	1	0	0	0	0	1	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0207	5254	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0208	5245	1	0	0	0	0	1	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0209	5246	1	0	0	0	0	1	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0210	5248	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0211	5240	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0212	5243	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0213	5243	1	0	0	0	0	1	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0214	5244	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0215	5246	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0216	5246	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0217	5247	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0218	5250	1	0	1	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0219	5243	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0220	5243	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0221	5245	1	0	1	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0222	5253	1	0	1	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0223	5241	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0224	5242	1	0	0	0	0	1	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0225	5246	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0226	5239	1	0	1	0	0	0	copy fasta	RCN2	chr15	76926749	76959393