JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RCN2_chr15_76926749_76959393	0/0	t0227	5241	1	0	1	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0228	5249	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0229	5242	1	0	1	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0230	5251	1	0	0	0	1	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0231	5242	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0232	5241	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0233	5243	1	0	1	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0234	5243	1	0	0	0	0	1	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0235	5248	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0236	5245	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0237	5242	1	0	1	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0238	5277	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0239	5279	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0240	5236	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0241	5223	1	0	0	0	0	1	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0242	5266	1	0	1	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0243	5258	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0244	5244	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0245	5249	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0246	5241	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0247	5241	1	0	1	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0248	5242	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0249	5242	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0250	5239	1	0	1	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0251	5242	1	0	1	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0252	5234	1	0	1	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0253	5223	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0254	5232	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0255	5223	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0256	5246	1	0	1	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0257	5253	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0258	5239	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0259	5253	1	0	1	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0260	5256	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0261	5255	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	1/0	t0262	5265	1	0	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0263	5257	1	0	1	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0264	5265	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0265	5265	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0266	5240	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	t0267	5257	1	0	1	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN3_chr19_49523003_49548633	1/1	t0001	483	335	78	67	131	16	41	copy fasta	RCN3	chr19	49523003	49548633
RCN3_chr19_49523003_49548633	0/0	t0002	483	31	13	7	9	0	2	copy fasta	RCN3	chr19	49523003	49548633
RCN3_chr19_49523003_49548633	0/0	t0003	483	4	0	0	4	0	0	copy fasta	RCN3	chr19	49523003	49548633
RCN3_chr19_49523003_49548633	0/0	t0004	483	2	0	0	2	0	0	copy fasta	RCN3	chr19	49523003	49548633
RCN3_chr19_49523003_49548633	0/0	t0005	483	2	0	0	2	0	0	copy fasta	RCN3	chr19	49523003	49548633
RCN3_chr19_49523003_49548633	0/0	t0006	483	2	2	0	0	0	0	copy fasta	RCN3	chr19	49523003	49548633
RCN3_chr19_49523003_49548633	0/0	t0007	483	1	0	0	1	0	0	copy fasta	RCN3	chr19	49523003	49548633
RCN3_chr19_49523003_49548633	0/0	t0008	483	1	0	0	0	0	1	copy fasta	RCN3	chr19	49523003	49548633
RCN3_chr19_49523003_49548633	0/0	t0009	483	1	0	0	1	0	0	copy fasta	RCN3	chr19	49523003	49548633