Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AXL_chr19_41214223_41266766	0/0	t0004	2022	20	11	0	8	1	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0005	2034	19	0	4	9	1	5	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/1	t0006	2033	18	3	2	7	1	4	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0007	2034	15	0	5	7	1	2	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0008	2022	12	7	0	4	0	1	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0009	2040	12	10	2	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0010	2037	8	0	3	1	0	4	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0011	2039	8	3	2	2	0	1	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0012	2040	8	0	2	2	0	4	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0013	2028	6	1	1	4	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0014	2033	6	1	3	1	1	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0015	2028	6	1	0	4	0	1	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0016	2035	5	0	1	3	1	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0017	2041	5	2	0	1	0	2	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0018	2042	5	4	0	1	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0019	2043	5	2	2	0	0	1	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0020	2033	5	1	3	0	0	1	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0021	2022	4	0	4	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0022	2038	4	0	3	0	0	1	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0023	2039	4	3	1	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0024	2035	4	1	3	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0025	2042	4	4	0	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0026	2034	3	0	0	3	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0027	2037	3	1	1	1	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0028	2038	3	1	0	1	0	1	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0029	2041	3	2	0	0	0	1	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0030	2043	3	2	1	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0031	2046	3	2	0	0	0	1	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0032	2022	3	3	0	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0033	2046	2	2	0	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0034	2053	2	1	1	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0035	2033	2	0	0	2	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0036	2056	2	2	0	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0037	2018	1	1	0	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0038	2021	1	0	0	0	0	1	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0039	2023	1	0	0	1	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0040	2033	1	0	0	1	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0041	2033	1	0	0	0	1	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0042	2044	1	1	0	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0043	2049	1	1	0	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0044	2051	1	1	0	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0045	2034	1	0	1	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0046	2033	1	1	0	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0047	2018	1	1	0	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0048	2018	1	1	0	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0049	2021	1	0	0	0	0	1	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0050	2023	1	0	0	1	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0051	2027	1	0	0	1	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0052	2039	1	1	0	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0053	2047	1	1	0	0	0	0	copy fasta	AXL	chr19	41214223	41266766