JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RCN3_chr19_49523003_49548633	0/0	t0010	483	1	1	0	0	0	0	copy fasta	RCN3	chr19	49523003	49548633
RCOR1_chr14_102587649_102735561	0/1	t0001	4294	60	3	15	33	3	5	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0002	4294	55	14	9	28	0	4	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0003	4294	40	17	11	3	3	6	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0004	4294	23	0	9	11	0	3	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0005	4294	16	12	4	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0006	4295	14	1	8	0	5	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0007	4294	8	1	3	4	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0008	4295	7	6	1	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	1/0	t0009	4294	7	6	0	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0010	4294	5	0	0	5	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0011	4295	4	2	2	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0012	4295	4	4	0	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0013	4294	3	1	1	0	0	1	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0014	4294	3	3	0	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0015	4294	2	0	0	0	1	1	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0016	4294	2	0	0	2	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0017	4295	2	2	0	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0018	4295	2	1	0	1	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0019	4295	2	1	1	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0020	4295	2	2	0	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0021	4295	1	1	0	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0022	4294	1	1	0	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0023	4294	1	0	0	0	0	1	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0024	4294	1	0	1	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0025	4294	1	0	1	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0026	4294	1	0	0	1	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0027	4294	1	0	0	1	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0028	4294	1	0	0	0	1	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0029	4294	1	0	0	0	0	1	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0030	4295	1	0	0	1	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0031	4294	1	1	0	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0032	4294	1	0	0	1	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0033	4294	1	0	0	0	1	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0034	4294	1	1	0	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0035	4294	1	0	0	0	0	1	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0036	4294	1	0	0	0	0	1	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0037	4294	1	0	1	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0038	4295	1	1	0	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0039	4294	1	1	0	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0040	4294	1	1	0	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0041	4294	1	0	0	1	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0042	4294	1	0	0	1	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0043	4294	1	1	0	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0044	4294	1	1	0	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0045	4294	1	1	0	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0046	4295	1	1	0	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0047	4295	1	0	0	0	0	1	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0048	4295	1	0	0	1	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0049	4294	1	0	1	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561