JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RCVRN_chr17_9891320_9910271	0/0	t0016	1867	4	4	0	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0017	1867	3	3	0	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0018	1870	2	0	0	0	0	2	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0019	1870	2	0	2	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0020	1867	2	2	0	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0021	1867	2	2	0	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0022	1867	2	0	0	0	2	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0023	1867	2	0	0	2	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0024	1864	2	2	0	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0025	1867	2	0	0	0	2	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0026	1867	2	1	1	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0027	1867	1	0	0	1	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0028	1877	1	0	1	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0029	1872	1	0	1	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0030	1867	1	1	0	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0031	1864	1	1	0	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0032	1867	1	1	0	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0033	1867	1	1	0	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0034	1867	1	1	0	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0035	1867	1	1	0	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0036	1867	1	0	0	1	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0037	1867	1	1	0	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0038	1864	1	0	0	1	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0039	1867	1	0	1	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0040	1867	1	1	0	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0041	1867	1	1	0	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0042	1867	1	1	0	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0043	1864	1	1	0	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0044	1864	1	0	0	0	0	1	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0045	1875	1	0	0	1	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0046	1867	1	0	0	1	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0047	1867	1	1	0	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0048	1867	1	0	0	1	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0049	1867	1	0	0	1	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0050	1867	1	0	0	1	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0051	1864	1	1	0	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0052	1867	1	1	0	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0053	1867	1	0	1	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	t0054	1867	1	0	1	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RD3L_chr14_103935426_103947529	0/1	t0001	826	390	73	75	182	18	41	copy fasta	RD3L	chr14	103935426	103947529
RD3L_chr14_103935426_103947529	0/0	t0002	822	19	0	4	15	0	0	copy fasta	RD3L	chr14	103935426	103947529
RD3L_chr14_103935426_103947529	1/0	t0003	826	17	14	2	0	0	0	copy fasta	RD3L	chr14	103935426	103947529
RD3L_chr14_103935426_103947529	0/0	t0004	826	8	7	1	0	0	0	copy fasta	RD3L	chr14	103935426	103947529
RD3L_chr14_103935426_103947529	0/0	t0005	826	3	0	0	3	0	0	copy fasta	RD3L	chr14	103935426	103947529
RD3L_chr14_103935426_103947529	0/0	t0006	826	1	0	0	1	0	0	copy fasta	RD3L	chr14	103935426	103947529
RD3L_chr14_103935426_103947529	0/0	t0007	826	1	0	0	0	0	1	copy fasta	RD3L	chr14	103935426	103947529
RD3L_chr14_103935426_103947529	0/0	t0008	826	1	0	0	1	0	0	copy fasta	RD3L	chr14	103935426	103947529
RD3_chr1_211471522_211497162	0/0	t0001	2910	88	2	12	65	2	7	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0002	2915	60	3	16	34	1	6	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0003	2920	35	8	6	14	3	4	copy fasta	RD3	chr1	211471522	211497162