JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RD3_chr1_211471522_211497162	1/0	t0004	2921	31	3	8	14	2	3	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0005	2919	28	2	11	4	2	9	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0006	2917	28	19	0	8	0	1	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0007	2922	9	5	1	1	1	1	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0008	2918	9	5	1	3	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0009	2912	9	0	2	7	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0010	2914	8	0	2	0	2	4	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0011	2912	8	0	1	6	0	1	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0012	2914	8	0	0	8	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0013	2919	7	4	2	0	0	1	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0014	2914	7	1	0	6	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0015	2925	3	1	0	1	1	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0016	2923	3	0	1	1	0	1	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/1	t0017	2920	3	1	0	0	0	1	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0018	2917	3	3	0	0	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0019	2917	3	1	2	0	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0020	2914	3	3	0	0	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0021	2916	3	0	0	3	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0022	2913	3	0	0	3	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0023	2911	3	0	2	1	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0024	2920	2	2	0	0	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0025	2919	2	2	0	0	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0026	2922	2	2	0	0	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0027	2921	2	2	0	0	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0028	2920	2	0	0	2	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0029	2920	2	0	1	0	0	1	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0030	2920	2	2	0	0	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0031	2915	2	0	0	0	0	2	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0032	2912	2	0	0	2	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0033	2910	2	2	0	0	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0034	2921	1	1	0	0	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0035	2924	1	0	0	0	0	1	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0036	2923	1	0	0	1	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0037	2922	1	1	0	0	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0038	2923	1	0	1	0	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0039	2922	1	1	0	0	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0040	2921	1	0	0	1	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0041	2920	1	0	0	1	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0042	2920	1	1	0	0	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0043	2919	1	0	0	0	0	1	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0044	2919	1	1	0	0	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0045	2918	1	1	0	0	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0046	2918	1	1	0	0	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0047	2919	1	0	0	1	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0048	2916	1	0	1	0	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0049	2916	1	1	0	0	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0050	2916	1	0	0	1	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0051	2916	1	0	0	1	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0052	2915	1	1	0	0	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0053	2916	1	1	0	0	0	0	copy fasta	RD3	chr1	211471522	211497162