JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RD3_chr1_211471522_211497162	0/0	t0054	2917	1	1	0	0	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0055	2914	1	0	0	1	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0056	2914	1	1	0	0	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0057	2915	1	1	0	0	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0058	2914	1	1	0	0	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0059	2915	1	0	0	1	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0060	2911	1	0	0	1	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0061	2912	1	0	0	0	0	1	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0062	2912	1	0	0	1	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0063	2910	1	0	0	1	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0064	2910	1	0	0	0	0	1	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0065	2910	1	1	0	0	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0066	2908	1	0	0	1	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	t0067	2907	1	0	0	1	0	0	copy fasta	RD3	chr1	211471522	211497162
RDH10_chr8_73289602_73330281	0/1	t0001	2935	107	9	28	55	3	11	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0002	2934	82	17	9	48	4	4	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0003	2936	60	19	10	28	1	2	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	1/0	t0004	2934	50	15	9	19	4	2	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0005	2937	22	7	6	8	0	1	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0006	2937	11	1	5	4	0	1	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0007	2936	10	0	0	10	0	0	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0008	2933	7	0	2	2	3	0	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0009	2936	5	0	0	5	0	0	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0010	2935	4	1	1	0	0	2	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0011	2935	4	4	0	0	0	0	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0012	2937	3	3	0	0	0	0	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0013	2935	3	0	0	3	0	0	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0014	2935	3	1	2	0	0	0	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0015	2934	2	0	0	0	0	2	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0016	2933	2	1	0	0	0	1	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0017	2934	2	2	0	0	0	0	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0018	2934	2	0	0	0	0	2	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0019	2934	2	1	1	0	0	0	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0020	2934	2	1	0	0	1	0	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0021	2937	1	0	0	1	0	0	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0022	2934	1	1	0	0	0	0	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0023	2934	1	1	0	0	0	0	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0024	2935	1	0	0	1	0	0	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0025	2935	1	0	0	1	0	0	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0026	2936	1	1	0	0	0	0	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0027	2936	1	1	0	0	0	0	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0028	2937	1	0	0	1	0	0	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0029	2937	1	1	0	0	0	0	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0030	2933	1	1	0	0	0	0	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0031	2935	1	1	0	0	0	0	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0032	2935	1	1	0	0	0	0	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	t0033	2937	1	0	1	0	0	0	copy fasta	RDH10	chr8	73289602	73330281
RDH11_chr14_67671800_67700764	0/1	t0001	1586	103	18	21	45	9	9	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	t0002	1585	68	9	8	38	2	11	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	t0003	1582	44	8	10	22	1	3	copy fasta	RDH11	chr14	67671800	67700764