JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RDH11_chr14_67671800_67700764	0/0	t0004	1587	39	9	14	13	0	3	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	t0005	1579	34	3	10	17	1	3	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	t0006	1580	25	6	1	17	1	0	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	1/0	t0007	1583	22	11	3	7	0	0	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	t0008	1585	14	0	4	0	3	7	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	t0009	1584	13	5	1	6	0	1	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	t0010	1583	12	0	3	7	1	1	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	t0011	1583	11	0	0	11	0	0	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	t0012	1586	9	9	0	0	0	0	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	t0013	1588	8	3	3	0	0	2	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	t0014	1587	8	8	0	0	0	0	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	t0015	1584	8	0	0	8	0	0	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	t0016	1583	3	0	0	3	0	0	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	t0017	1581	3	1	0	2	0	0	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	t0018	1583	1	0	0	1	0	0	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	t0019	1586	1	0	0	1	0	0	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	t0020	1582	1	1	0	0	0	0	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	t0021	1579	1	0	1	0	0	0	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	t0022	1584	1	0	0	1	0	0	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	t0023	1587	1	1	0	0	0	0	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	t0024	1586	1	1	0	0	0	0	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	t0025	1579	1	0	0	1	0	0	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	t0026	1588	1	1	0	0	0	0	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	t0027	1585	1	1	0	0	0	0	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	t0028	1586	1	0	1	0	0	0	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	t0029	1582	1	0	0	1	0	0	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	t0030	1568	1	0	0	1	0	0	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	t0031	1580	1	1	0	0	0	0	copy fasta	RDH11	chr14	67671800	67700764
RDH12_chr14_67696886_67739451	1/1	t0001	928	401	85	81	175	15	43	copy fasta	RDH12	chr14	67696886	67739451
RDH12_chr14_67696886_67739451	0/0	t0002	928	27	2	0	25	0	0	copy fasta	RDH12	chr14	67696886	67739451
RDH12_chr14_67696886_67739451	0/0	t0003	928	4	3	1	0	0	0	copy fasta	RDH12	chr14	67696886	67739451
RDH12_chr14_67696886_67739451	0/0	t0004	928	1	0	0	0	0	1	copy fasta	RDH12	chr14	67696886	67739451
RDH12_chr14_67696886_67739451	0/0	t0005	928	1	0	0	0	1	0	copy fasta	RDH12	chr14	67696886	67739451
RDH13_chr19_55039316_55068148	0/0	t0001	882	72	10	8	38	4	12	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0002	889	47	1	7	31	0	8	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0003	889	39	1	3	35	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0004	882	36	5	9	9	5	8	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0005	889	33	1	9	23	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/1	t0006	882	33	4	9	8	4	7	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0007	875	29	13	6	4	3	3	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0008	881	18	0	9	4	2	3	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0009	882	16	14	2	0	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0010	882	10	0	1	9	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0011	882	4	4	0	0	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0012	881	4	1	2	0	0	1	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0013	889	3	0	0	3	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0014	889	3	0	1	1	0	1	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0015	881	3	3	0	0	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0016	889	3	0	0	3	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0017	882	2	1	1	0	0	0	copy fasta	RDH13	chr19	55039316	55068148