JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RDH13_chr19_55039316_55068148	0/0	t0018	889	2	1	0	1	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0019	881	2	0	0	0	0	2	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0020	895	1	1	0	0	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0021	895	1	0	1	0	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0022	889	1	0	0	1	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0023	888	1	1	0	0	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0024	874	1	0	0	0	0	1	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0025	875	1	1	0	0	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0026	882	1	0	1	0	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0027	882	1	0	0	1	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0028	889	1	0	1	0	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0029	882	1	1	0	0	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0030	882	1	1	0	0	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0031	882	1	1	0	0	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0032	882	1	1	0	0	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0033	882	1	0	1	0	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0034	875	1	0	1	0	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0035	890	1	0	0	1	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0036	889	1	0	0	1	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	t0037	882	1	0	0	1	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH14_chr2_18549723_18565653	1/1	t0001	550	446	90	84	216	16	38	copy fasta	RDH14	chr2	18549723	18565653
RDH14_chr2_18549723_18565653	0/0	t0002	550	4	4	0	0	0	0	copy fasta	RDH14	chr2	18549723	18565653
RDH14_chr2_18549723_18565653	0/0	t0003	550	1	1	0	0	0	0	copy fasta	RDH14	chr2	18549723	18565653
RDH14_chr2_18549723_18565653	0/0	t0004	550	1	1	0	0	0	0	copy fasta	RDH14	chr2	18549723	18565653
RDH16_chr12_56946431_56962608	1/1	t0001	745	359	90	69	150	10	38	copy fasta	RDH16	chr12	56946431	56962608
RDH16_chr12_56946431_56962608	0/0	t0002	745	7	0	3	0	1	3	copy fasta	RDH16	chr12	56946431	56962608
RDH16_chr12_56946431_56962608	0/0	t0003	745	2	2	0	0	0	0	copy fasta	RDH16	chr12	56946431	56962608
RDH16_chr12_56946431_56962608	0/0	t0004	745	2	0	2	0	0	0	copy fasta	RDH16	chr12	56946431	56962608
RDH16_chr12_56946431_56962608	0/0	t0005	745	1	1	0	0	0	0	copy fasta	RDH16	chr12	56946431	56962608
RDH16_chr12_56946431_56962608	0/0	t0006	745	1	0	0	0	0	1	copy fasta	RDH16	chr12	56946431	56962608
RDH16_chr12_56946431_56962608	0/0	t0007	745	1	0	0	1	0	0	copy fasta	RDH16	chr12	56946431	56962608
RDH16_chr12_56946431_56962608	0/0	t0008	745	1	0	0	1	0	0	copy fasta	RDH16	chr12	56946431	56962608
RDH16_chr12_56946431_56962608	0/0	t0009	745	1	0	0	0	1	0	copy fasta	RDH16	chr12	56946431	56962608
RDH16_chr12_56946431_56962608	0/0	t0010	745	1	1	0	0	0	0	copy fasta	RDH16	chr12	56946431	56962608
RDH5_chr12_55715393_55729705	1/1	t0001	318	399	88	71	180	14	44	copy fasta	RDH5	chr12	55715393	55729705
RDH5_chr12_55715393_55729705	0/0	t0002	318	6	5	1	0	0	0	copy fasta	RDH5	chr12	55715393	55729705
RDH5_chr12_55715393_55729705	0/0	t0003	315	3	3	0	0	0	0	copy fasta	RDH5	chr12	55715393	55729705
RDH8_chr19_10008483_10027279	0/0	t0001	544	240	57	28	124	7	24	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	1/1	t0002	546	187	30	43	86	10	16	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	0/0	t0003	546	29	2	10	8	1	8	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	0/0	t0004	546	4	2	2	0	0	0	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	0/0	t0005	546	2	2	0	0	0	0	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	0/0	t0006	546	1	1	0	0	0	0	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	0/0	t0007	544	1	0	1	0	0	0	copy fasta	RDH8	chr19	10008483	10027279
RDM1_chr17_35913080_35935773	0/1	t0001	309	352	89	56	168	10	28	copy fasta	RDM1	chr17	35913080	35935773
RDM1_chr17_35913080_35935773	0/0	t0002	309	1	0	0	1	0	0	copy fasta	RDM1	chr17	35913080	35935773
RDM1_chr17_35913080_35935773	0/0	t0003	309	1	0	0	1	0	0	copy fasta	RDM1	chr17	35913080	35935773
RDM1_chr17_35913080_35935773	0/0	t0004	309	1	1	0	0	0	0	copy fasta	RDM1	chr17	35913080	35935773
RDX_chr11_110224441_110301614	0/0	t0001	2638	141	25	24	74	7	11	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0002	2641	78	13	16	32	2	15	copy fasta	RDX	chr11	110224441	110301614