JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RDX_chr11_110224441_110301614	0/0	t0003	2644	30	0	3	27	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0004	2646	19	9	2	3	4	1	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0005	2638	14	0	3	11	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0006	2642	14	11	3	0	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0007	2637	6	4	0	0	0	2	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0008	2640	5	2	3	0	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/1	t0009	2648	5	0	2	0	1	1	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0010	2644	4	4	0	0	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0011	2648	4	4	0	0	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0012	2648	4	3	1	0	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0013	2650	4	1	1	1	0	1	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0014	2644	4	4	0	0	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0015	2636	3	0	0	3	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0016	2640	3	0	0	3	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0017	2638	2	0	0	2	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0018	2642	2	1	1	0	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0019	2640	2	0	0	2	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0020	2648	2	2	0	0	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0021	2644	2	0	0	2	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0022	2643	2	1	0	0	0	1	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0023	2648	2	2	0	0	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0024	2638	2	2	0	0	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0025	2644	1	1	0	0	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0026	2646	1	0	1	0	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0027	2638	1	1	0	0	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0028	2634	1	0	0	1	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0029	2638	1	0	0	0	0	1	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0030	2638	1	0	0	0	0	1	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0031	2642	1	1	0	0	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0032	2644	1	1	0	0	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0033	2646	1	1	0	0	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0034	2644	1	0	0	1	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0035	2644	1	1	0	0	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0036	2644	1	0	0	1	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0037	2639	1	0	1	0	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0038	2643	1	0	0	1	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0039	2647	1	0	0	0	1	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0040	2638	1	0	0	1	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0041	2641	1	0	0	0	1	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0042	2638	1	1	0	0	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0043	2646	1	1	0	0	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0044	2638	1	0	0	1	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	1/0	t0045	2641	1	0	0	0	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	t0046	2641	1	0	1	0	0	0	copy fasta	RDX	chr11	110224441	110301614
REC114_chr15_73438164_73565013	1/0	t0001	120	122	42	16	47	4	12	copy fasta	REC114	chr15	73438164	73565013
REC114_chr15_73438164_73565013	0/1	t0002	119	62	28	6	23	0	4	copy fasta	REC114	chr15	73438164	73565013
REC114_chr15_73438164_73565013	0/0	t0003	120	1	0	1	0	0	0	copy fasta	REC114	chr15	73438164	73565013
REC114_chr15_73438164_73565013	0/0	t0004	120	1	0	0	1	0	0	copy fasta	REC114	chr15	73438164	73565013
REC114_chr15_73438164_73565013	0/0	t0005	141	1	0	0	1	0	0	copy fasta	REC114	chr15	73438164	73565013
REC114_chr15_73438164_73565013	0/0	t0006	120	1	0	1	0	0	0	copy fasta	REC114	chr15	73438164	73565013