JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
REC8_chr14_24167080_24185254	1/1	t0001	633	213	32	35	106	10	28	copy fasta	REC8	chr14	24167080	24185254
REC8_chr14_24167080_24185254	0/0	t0002	633	211	52	36	96	6	21	copy fasta	REC8	chr14	24167080	24185254
REC8_chr14_24167080_24185254	0/0	t0003	615	5	5	0	0	0	0	copy fasta	REC8	chr14	24167080	24185254
REC8_chr14_24167080_24185254	0/0	t0004	633	2	0	0	2	0	0	copy fasta	REC8	chr14	24167080	24185254
REC8_chr14_24167080_24185254	0/0	t0005	633	2	0	0	2	0	0	copy fasta	REC8	chr14	24167080	24185254
REC8_chr14_24167080_24185254	0/0	t0006	633	1	0	1	0	0	0	copy fasta	REC8	chr14	24167080	24185254
REC8_chr14_24167080_24185254	0/0	t0007	615	1	0	0	0	0	1	copy fasta	REC8	chr14	24167080	24185254
REC8_chr14_24167080_24185254	0/0	t0008	633	1	1	0	0	0	0	copy fasta	REC8	chr14	24167080	24185254
RECK_chr9_36031913_36129455	1/1	t0001	1497	356	73	68	168	13	32	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	t0002	1497	5	4	1	0	0	0	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	t0003	1497	4	4	0	0	0	0	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	t0004	1493	4	4	0	0	0	0	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	t0005	1497	3	3	0	0	0	0	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	t0006	1497	3	0	0	3	0	0	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	t0007	1494	3	3	0	0	0	0	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	t0008	1497	3	3	0	0	0	0	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	t0009	1497	3	0	3	0	0	0	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	t0010	1497	2	0	0	0	0	2	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	t0011	1497	2	2	0	0	0	0	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	t0012	1497	2	0	0	0	1	1	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	t0013	1497	1	0	0	0	0	1	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	t0014	1497	1	0	0	1	0	0	copy fasta	RECK	chr9	36031913	36129455
RECQL4_chr8_144506288_144522833	1/1	t0001	193	405	93	79	171	18	42	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	t0002	193	3	2	1	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	t0003	193	3	3	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	t0004	193	1	0	0	1	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL5_chr17_75621854_75672154	1/1	t0001	694	361	86	65	150	14	44	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	t0002	694	4	4	0	0	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	t0003	694	3	2	1	0	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	t0004	694	2	2	0	0	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	t0005	694	2	0	0	0	0	2	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	t0006	694	2	2	0	0	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	t0007	694	1	0	1	0	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	t0008	694	1	1	0	0	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	t0009	694	1	0	1	0	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	t0010	694	1	1	0	0	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL_chr12_21463910_21506635	0/0	t0001	1796	90	1	15	57	5	12	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0002	1796	76	7	15	40	6	8	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0003	1796	61	0	5	51	1	4	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0004	1796	24	0	3	19	0	2	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0005	1796	23	14	7	0	1	1	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0006	1796	17	15	2	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	1/0	t0007	1796	13	7	2	0	1	2	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0008	1795	9	9	0	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0009	1796	8	7	1	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0010	1793	7	0	1	6	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0011	1795	5	1	0	3	0	1	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0012	1781	5	5	0	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/1	t0013	1795	4	0	1	0	1	1	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0014	1796	4	4	0	0	0	0	copy fasta	RECQL	chr12	21463910	21506635