Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AXL_chr19_41214223_41266766	0/0	t0054	2048	1	1	0	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0055	2049	1	1	0	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0056	2052	1	1	0	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0057	2053	1	0	1	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0058	2055	1	0	1	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AZGP1_chr7_99961730_99981031	1/1	t0001	285	429	93	76	194	18	46	copy fasta	AZGP1	chr7	99961730	99981031
AZGP1_chr7_99961730_99981031	0/0	t0002	285	3	3	0	0	0	0	copy fasta	AZGP1	chr7	99961730	99981031
AZI2_chr3_28316047_28353824	0/0	t0001	3225	207	64	38	73	7	25	copy fasta	AZI2	chr3	28316047	28353824
AZI2_chr3_28316047_28353824	1/0	t0002	3225	69	3	13	42	2	8	copy fasta	AZI2	chr3	28316047	28353824
AZI2_chr3_28316047_28353824	0/1	t0003	3224	46	1	15	22	3	4	copy fasta	AZI2	chr3	28316047	28353824
AZI2_chr3_28316047_28353824	0/0	t0004	3225	9	8	1	0	0	0	copy fasta	AZI2	chr3	28316047	28353824
AZI2_chr3_28316047_28353824	0/0	t0005	3225	4	4	0	0	0	0	copy fasta	AZI2	chr3	28316047	28353824
AZI2_chr3_28316047_28353824	0/0	t0006	3226	3	1	0	1	1	0	copy fasta	AZI2	chr3	28316047	28353824
AZI2_chr3_28316047_28353824	0/0	t0007	3223	3	1	0	2	0	0	copy fasta	AZI2	chr3	28316047	28353824
AZI2_chr3_28316047_28353824	0/0	t0008	3225	2	2	0	0	0	0	copy fasta	AZI2	chr3	28316047	28353824
AZI2_chr3_28316047_28353824	0/0	t0009	3226	2	0	0	1	0	1	copy fasta	AZI2	chr3	28316047	28353824
AZI2_chr3_28316047_28353824	0/0	t0010	3225	2	0	0	0	1	1	copy fasta	AZI2	chr3	28316047	28353824
AZI2_chr3_28316047_28353824	0/0	t0011	3225	2	2	0	0	0	0	copy fasta	AZI2	chr3	28316047	28353824
AZI2_chr3_28316047_28353824	0/0	t0012	3225	1	0	0	1	0	0	copy fasta	AZI2	chr3	28316047	28353824
AZI2_chr3_28316047_28353824	0/0	t0013	3225	1	0	1	0	0	0	copy fasta	AZI2	chr3	28316047	28353824
AZI2_chr3_28316047_28353824	0/0	t0014	3226	1	0	0	1	0	0	copy fasta	AZI2	chr3	28316047	28353824
AZI2_chr3_28316047_28353824	0/0	t0015	3226	1	0	0	1	0	0	copy fasta	AZI2	chr3	28316047	28353824
AZI2_chr3_28316047_28353824	0/0	t0016	3224	1	0	0	0	0	1	copy fasta	AZI2	chr3	28316047	28353824
AZI2_chr3_28316047_28353824	0/0	t0017	3225	1	1	0	0	0	0	copy fasta	AZI2	chr3	28316047	28353824
AZI2_chr3_28316047_28353824	0/0	t0018	3225	1	1	0	0	0	0	copy fasta	AZI2	chr3	28316047	28353824
AZI2_chr3_28316047_28353824	0/0	t0019	3225	1	1	0	0	0	0	copy fasta	AZI2	chr3	28316047	28353824
AZI2_chr3_28316047_28353824	0/0	t0020	3225	1	0	0	1	0	0	copy fasta	AZI2	chr3	28316047	28353824
AZI2_chr3_28316047_28353824	0/0	t0021	3225	1	1	0	0	0	0	copy fasta	AZI2	chr3	28316047	28353824
AZI2_chr3_28316047_28353824	0/0	t0022	3225	1	0	0	1	0	0	copy fasta	AZI2	chr3	28316047	28353824
AZIN1_chr8_102821308_102869163	1/0	t0001	2850	143	37	24	52	9	20	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	t0002	2850	74	28	5	40	0	1	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/1	t0003	2850	31	1	15	10	1	3	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	t0004	2850	29	0	1	20	1	7	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	t0005	2850	28	3	8	7	2	8	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	t0006	2850	16	1	4	10	1	0	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	t0007	2850	15	12	3	0	0	0	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	t0008	2850	14	1	2	11	0	0	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	t0009	2849	4	4	0	0	0	0	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	t0010	2850	4	0	0	4	0	0	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	t0011	2850	2	2	0	0	0	0	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	t0012	2850	2	0	0	1	0	1	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	t0013	2850	2	0	2	0	0	0	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	t0014	2850	2	0	0	2	0	0	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	t0015	2850	1	0	1	0	0	0	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	t0016	2850	1	0	1	0	0	0	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	t0017	2850	1	1	0	0	0	0	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	t0018	2850	1	0	1	0	0	0	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	t0019	2850	1	1	0	0	0	0	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	t0020	2850	1	0	0	1	0	0	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	t0021	2850	1	0	0	1	0	0	copy fasta	AZIN1	chr8	102821308	102869163