JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RECQL_chr12_21463910_21506635	0/0	t0015	1795	3	0	0	1	0	2	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0016	1796	3	2	0	0	0	1	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0017	1795	3	0	0	2	0	1	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0018	1796	3	3	0	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0019	1796	3	3	0	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0020	1795	2	2	0	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0021	1796	2	2	0	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0022	1796	2	2	0	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0023	1796	2	1	1	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0024	1795	2	2	0	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0025	1795	2	0	0	2	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0026	1796	2	0	0	2	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0027	1795	2	0	0	2	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0028	1795	2	0	2	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0029	1811	1	0	0	1	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0030	1796	1	1	0	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0031	1796	1	1	0	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0032	1796	1	1	0	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0033	1796	1	0	0	0	0	1	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0034	1796	1	0	0	0	0	1	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0035	1796	1	1	0	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0036	1795	1	0	0	1	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0037	1796	1	0	0	1	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0038	1795	1	1	0	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0039	1796	1	1	0	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0040	1795	1	1	0	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0041	1796	1	0	1	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0042	1796	1	1	0	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0043	1796	1	0	1	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0044	1796	1	0	0	0	1	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0045	1796	1	0	0	0	0	1	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0046	1796	1	1	0	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0047	1487	1	1	0	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0048	1796	1	0	1	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0049	1795	1	1	0	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0050	1796	1	0	1	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0051	1796	1	0	1	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0052	1796	1	1	0	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	t0053	1780	1	1	0	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
REELD1_chr4_146209538_146237267	0/0	t0001	2046	194	29	44	90	5	26	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	1/0	t0002	2046	44	0	6	34	2	1	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0003	2046	38	2	9	17	4	6	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/1	t0004	2046	30	11	4	10	1	3	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0005	2046	15	3	3	5	2	2	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0006	2046	15	0	2	11	0	2	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0007	2046	12	0	1	10	0	1	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0008	2046	10	5	0	5	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0009	2046	7	0	0	7	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0010	2046	7	7	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0011	2046	6	6	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267