JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
REELD1_chr4_146209538_146237267	0/0	t0012	2046	6	0	2	4	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0013	2046	5	4	1	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0014	2046	4	4	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0015	2046	3	1	0	0	1	1	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0016	2046	3	3	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0017	2046	3	0	0	3	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0018	2046	3	1	2	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0019	2046	2	2	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0020	2046	2	0	2	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0021	2046	2	2	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0022	2046	2	0	0	2	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0023	2046	2	2	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0024	2046	2	0	1	0	0	1	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0025	2046	1	1	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0026	2046	1	1	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0027	2046	1	1	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0028	2046	1	1	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0029	2046	1	0	0	0	1	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0030	2046	1	0	1	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0031	2046	1	0	0	1	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0032	2046	1	0	0	1	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0033	2046	1	0	0	1	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0034	2046	1	0	0	1	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0035	2046	1	0	0	0	0	1	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0036	2046	1	0	0	1	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0037	2046	1	0	0	1	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0038	2046	1	1	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0039	2046	1	1	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0040	2046	1	1	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	t0041	2046	1	1	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REEP1_chr2_86208993_86342626	0/0	t0001	3167	86	0	19	52	1	14	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/1	t0002	3162	53	17	16	13	5	1	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	1/0	t0003	3163	39	14	6	7	2	9	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0004	3164	26	0	1	23	2	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0005	3165	15	0	0	14	0	1	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0006	3162	14	14	0	0	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0007	3167	11	11	0	0	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0008	3164	8	7	0	0	0	1	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0009	3163	8	8	0	0	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0010	3168	6	0	2	3	0	1	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0011	3163	4	4	0	0	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0012	3167	3	0	3	0	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0013	3166	3	0	0	3	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0014	3164	3	0	0	1	0	2	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0015	3168	2	2	0	0	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0016	3168	2	0	2	0	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0017	3165	2	0	0	2	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0018	3165	2	2	0	0	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0019	3164	2	1	0	0	0	1	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0020	3163	2	2	0	0	0	0	copy fasta	REEP1	chr2	86208993	86342626