JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
REEP1_chr2_86208993_86342626	0/0	t0021	3163	2	1	1	0	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0022	3162	2	2	0	0	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0023	3168	1	1	0	0	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0024	3167	1	1	0	0	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0025	3168	1	1	0	0	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0026	3169	1	1	0	0	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0027	3168	1	0	0	0	1	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0028	3166	1	0	0	1	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0029	3164	1	0	0	1	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0030	3164	1	0	0	1	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0031	3162	1	0	0	0	1	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0032	3164	1	0	0	1	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0033	3163	1	0	0	1	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0034	3163	1	0	1	0	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0035	3164	1	1	0	0	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0036	3164	1	0	1	0	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0037	3165	1	0	1	0	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0038	3163	1	0	0	0	1	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0039	3163	1	1	0	0	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0040	3168	1	0	0	0	0	1	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0041	3166	1	0	1	0	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0042	3167	1	0	0	1	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0043	3167	1	0	1	0	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0044	3163	1	1	0	0	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0045	3167	1	0	0	0	1	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0046	3148	1	0	0	0	0	1	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	t0047	3162	1	0	1	0	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP2_chr5_138434057_138451965	0/1	t0001	1367	249	49	37	131	9	22	copy fasta	REEP2	chr5	138434057	138451965
REEP2_chr5_138434057_138451965	0/0	t0002	1367	144	27	42	46	7	22	copy fasta	REEP2	chr5	138434057	138451965
REEP2_chr5_138434057_138451965	0/0	t0003	1367	10	0	0	10	0	0	copy fasta	REEP2	chr5	138434057	138451965
REEP2_chr5_138434057_138451965	1/0	t0004	1367	10	9	0	0	0	0	copy fasta	REEP2	chr5	138434057	138451965
REEP2_chr5_138434057_138451965	0/0	t0005	1367	7	0	0	7	0	0	copy fasta	REEP2	chr5	138434057	138451965
REEP2_chr5_138434057_138451965	0/0	t0006	1367	4	2	0	2	0	0	copy fasta	REEP2	chr5	138434057	138451965
REEP2_chr5_138434057_138451965	0/0	t0007	1367	2	1	1	0	0	0	copy fasta	REEP2	chr5	138434057	138451965
REEP2_chr5_138434057_138451965	0/0	t0008	1367	1	1	0	0	0	0	copy fasta	REEP2	chr5	138434057	138451965
REEP2_chr5_138434057_138451965	0/0	t0009	1367	1	1	0	0	0	0	copy fasta	REEP2	chr5	138434057	138451965
REEP2_chr5_138434057_138451965	0/0	t0010	1367	1	0	0	0	0	1	copy fasta	REEP2	chr5	138434057	138451965
REEP2_chr5_138434057_138451965	0/0	t0011	1367	1	0	0	1	0	0	copy fasta	REEP2	chr5	138434057	138451965
REEP2_chr5_138434057_138451965	0/0	t0012	1367	1	0	0	1	0	0	copy fasta	REEP2	chr5	138434057	138451965
REEP2_chr5_138434057_138451965	0/0	t0013	1367	1	0	0	0	0	1	copy fasta	REEP2	chr5	138434057	138451965
REEP3_chr10_63516401_63630128	0/0	t0001	4409	47	12	5	23	5	2	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	1/0	t0002	4405	38	1	3	28	1	4	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0003	4411	26	3	5	16	1	1	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0004	4409	17	1	0	14	1	1	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0005	4407	15	5	0	5	3	2	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0006	4410	8	0	1	7	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0007	4410	8	1	4	0	1	2	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/1	t0008	4385	8	4	2	0	1	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0009	4413	8	1	3	2	1	1	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0010	4410	5	5	0	0	0	0	copy fasta	REEP3	chr10	63516401	63630128