JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
REEP3_chr10_63516401_63630128	0/0	t0011	4405	5	2	0	1	0	2	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0012	4407	4	0	1	3	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0013	4406	4	3	1	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0014	4406	3	2	1	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0015	4411	3	0	0	3	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0016	4409	3	0	1	2	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0017	4416	3	3	0	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0018	4408	3	1	0	2	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0019	4409	2	0	0	2	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0020	4411	2	0	0	2	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0021	4405	2	0	1	0	0	1	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0022	4414	2	0	1	1	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0023	4391	2	1	1	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0024	4405	2	0	0	2	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0025	4403	2	0	0	1	0	1	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0026	4406	2	0	0	2	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0027	4415	2	2	0	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0028	4416	2	2	0	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0029	4420	2	2	0	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0030	4417	2	2	0	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0031	4423	2	1	1	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0032	4405	2	2	0	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0033	4408	2	2	0	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0034	4410	2	0	1	1	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0035	4412	2	1	1	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0036	4412	1	0	1	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0037	4410	1	0	1	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0038	4407	1	1	0	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0039	4395	1	0	0	1	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0040	4405	1	0	0	1	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0041	4413	1	0	0	1	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0042	4413	1	0	0	1	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0043	4413	1	0	0	1	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0044	4411	1	0	0	1	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0045	4405	1	0	1	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0046	4401	1	1	0	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0047	4407	1	0	0	0	0	1	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0048	4411	1	1	0	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0049	4408	1	0	1	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0050	4410	1	0	0	0	1	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0051	4385	1	1	0	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0052	4407	1	1	0	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0053	4401	1	0	0	0	0	1	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0054	4403	1	0	1	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0055	4407	1	0	0	0	0	1	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0056	4408	1	1	0	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0057	4410	1	1	0	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0058	4404	1	0	1	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0059	4406	1	0	0	1	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0060	4408	1	0	0	1	0	0	copy fasta	REEP3	chr10	63516401	63630128