JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
REEP3_chr10_63516401_63630128	0/0	t0061	4422	1	0	1	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0062	4406	1	1	0	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0063	4418	1	1	0	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0064	4417	1	1	0	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0065	4419	1	1	0	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0066	4421	1	1	0	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0067	4417	1	1	0	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0068	4418	1	0	1	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0069	4420	1	1	0	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0070	4422	1	1	0	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0071	4431	1	1	0	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0072	4409	1	0	0	0	1	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0073	4411	1	0	0	1	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0074	4415	1	0	0	1	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0075	4414	1	0	0	1	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0076	4405	1	0	1	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	t0077	4406	1	1	0	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP4_chr8_22133020_22146907	1/1	t0001	893	326	74	67	130	15	38	copy fasta	REEP4	chr8	22133020	22146907
REEP4_chr8_22133020_22146907	0/0	t0002	874	44	1	12	21	3	7	copy fasta	REEP4	chr8	22133020	22146907
REEP4_chr8_22133020_22146907	0/0	t0003	893	7	7	0	0	0	0	copy fasta	REEP4	chr8	22133020	22146907
REEP4_chr8_22133020_22146907	0/0	t0004	893	7	6	0	0	0	1	copy fasta	REEP4	chr8	22133020	22146907
REEP4_chr8_22133020_22146907	0/0	t0005	893	4	4	0	0	0	0	copy fasta	REEP4	chr8	22133020	22146907
REEP4_chr8_22133020_22146907	0/0	t0006	889	3	0	0	3	0	0	copy fasta	REEP4	chr8	22133020	22146907
REEP4_chr8_22133020_22146907	0/0	t0007	874	2	0	1	0	0	1	copy fasta	REEP4	chr8	22133020	22146907
REEP4_chr8_22133020_22146907	0/0	t0008	893	2	2	0	0	0	0	copy fasta	REEP4	chr8	22133020	22146907
REEP4_chr8_22133020_22146907	0/0	t0009	893	2	0	0	0	0	2	copy fasta	REEP4	chr8	22133020	22146907
REEP4_chr8_22133020_22146907	0/0	t0010	893	1	0	0	0	0	1	copy fasta	REEP4	chr8	22133020	22146907
REEP4_chr8_22133020_22146907	0/0	t0011	874	1	0	0	1	0	0	copy fasta	REEP4	chr8	22133020	22146907
REEP4_chr8_22133020_22146907	0/0	t0012	893	1	0	0	1	0	0	copy fasta	REEP4	chr8	22133020	22146907
REEP5_chr5_112871385_112927227	0/1	t0001	2423	83	3	14	53	5	7	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0002	2437	37	7	11	11	2	6	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0003	2425	28	0	10	6	5	7	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0004	2439	28	9	4	12	1	2	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0005	2443	17	2	4	11	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0006	2421	14	4	3	4	1	2	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0007	2425	13	13	0	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0008	2425	10	0	3	4	0	3	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0009	2427	8	8	0	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0010	2437	6	1	1	4	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0011	2445	6	1	0	3	0	2	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	1/0	t0012	2439	5	3	0	1	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0013	2419	5	1	3	0	1	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0014	2435	5	3	1	0	1	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0015	2423	4	0	0	4	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0016	2427	4	3	1	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0017	2441	3	0	0	3	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0018	2437	3	0	0	3	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0019	2423	3	0	1	0	0	2	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0020	2441	3	0	0	3	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0021	2441	3	3	0	0	0	0	copy fasta	REEP5	chr5	112871385	112927227