JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
REEP5_chr5_112871385_112927227	0/0	t0022	2427	2	1	1	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0023	2443	2	2	0	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0024	2441	2	2	0	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0025	2418	2	0	2	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0026	2439	2	2	0	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0027	2437	2	1	1	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0028	2429	2	0	0	2	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0029	2429	2	2	0	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0030	2431	2	2	0	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0031	2431	2	1	1	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0032	2423	1	0	1	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0033	2423	1	0	1	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0034	2421	1	0	0	1	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0035	2419	1	0	0	0	0	1	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0036	2424	1	0	0	1	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0037	2447	1	1	0	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0038	2443	1	0	0	1	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0039	2427	1	1	0	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0040	2425	1	0	1	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0041	2423	1	0	1	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0042	2423	1	0	0	0	0	1	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0043	2431	1	1	0	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0044	2439	1	1	0	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0045	2435	1	1	0	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0046	2427	1	1	0	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0047	2432	1	1	0	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0048	2429	1	1	0	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0049	2449	1	1	0	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0050	2447	1	0	0	1	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0051	2441	1	1	0	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0052	2439	1	1	0	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0053	2435	1	1	0	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0054	2407	1	1	0	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0055	2425	1	1	0	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0056	2425	1	1	0	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0057	2433	1	0	0	0	0	1	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0058	2443	1	0	0	1	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0059	2437	1	0	0	1	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0060	2437	1	1	0	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0061	2431	1	1	0	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0062	2429	1	0	1	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	t0063	2425	1	1	0	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP6_chr19_1486181_1502927	1/1	t0001	806	155	25	31	68	5	24	copy fasta	REEP6	chr19	1486181	1502927
REEP6_chr19_1486181_1502927	0/0	t0002	806	118	37	25	42	5	9	copy fasta	REEP6	chr19	1486181	1502927
REEP6_chr19_1486181_1502927	0/0	t0003	806	15	10	4	0	0	1	copy fasta	REEP6	chr19	1486181	1502927
REEP6_chr19_1486181_1502927	0/0	t0004	806	8	8	0	0	0	0	copy fasta	REEP6	chr19	1486181	1502927
REEP6_chr19_1486181_1502927	0/0	t0005	806	6	0	4	2	0	0	copy fasta	REEP6	chr19	1486181	1502927
REEP6_chr19_1486181_1502927	0/0	t0006	806	4	3	1	0	0	0	copy fasta	REEP6	chr19	1486181	1502927
REEP6_chr19_1486181_1502927	0/0	t0007	806	2	0	0	2	0	0	copy fasta	REEP6	chr19	1486181	1502927
REEP6_chr19_1486181_1502927	0/0	t0008	806	2	0	0	2	0	0	copy fasta	REEP6	chr19	1486181	1502927