JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
REEP6_chr19_1486181_1502927	0/0	t0009	806	1	1	0	0	0	0	copy fasta	REEP6	chr19	1486181	1502927
REEP6_chr19_1486181_1502927	0/0	t0010	806	1	0	1	0	0	0	copy fasta	REEP6	chr19	1486181	1502927
REEP6_chr19_1486181_1502927	0/0	t0011	806	1	0	0	1	0	0	copy fasta	REEP6	chr19	1486181	1502927
REEP6_chr19_1486181_1502927	0/0	t0012	806	1	1	0	0	0	0	copy fasta	REEP6	chr19	1486181	1502927
REEP6_chr19_1486181_1502927	0/0	t0013	806	1	0	0	0	1	0	copy fasta	REEP6	chr19	1486181	1502927
REEP6_chr19_1486181_1502927	0/0	t0014	806	1	1	0	0	0	0	copy fasta	REEP6	chr19	1486181	1502927
REEP6_chr19_1486181_1502927	0/0	t0015	806	1	0	0	0	1	0	copy fasta	REEP6	chr19	1486181	1502927
REEP6_chr19_1486181_1502927	0/0	t0016	806	1	0	0	1	0	0	copy fasta	REEP6	chr19	1486181	1502927
REG1A_chr2_79115488_79128409	0/1	t0001	268	314	83	62	129	7	32	copy fasta	REG1A	chr2	79115488	79128409
REG1A_chr2_79115488_79128409	0/0	t0002	268	130	13	23	81	3	10	copy fasta	REG1A	chr2	79115488	79128409
REG1A_chr2_79115488_79128409	1/0	t0003	268	6	0	1	0	4	0	copy fasta	REG1A	chr2	79115488	79128409
REG1A_chr2_79115488_79128409	0/0	t0004	268	2	0	0	2	0	0	copy fasta	REG1A	chr2	79115488	79128409
REG1B_chr2_79080023_79092993	1/1	t0001	275	462	94	83	217	16	50	copy fasta	REG1B	chr2	79080023	79092993
REG1B_chr2_79080023_79092993	0/0	t0002	275	1	0	0	1	0	0	copy fasta	REG1B	chr2	79080023	79092993
REG1B_chr2_79080023_79092993	0/0	t0003	275	1	1	0	0	0	0	copy fasta	REG1B	chr2	79080023	79092993
REG1B_chr2_79080023_79092993	0/0	t0004	275	1	1	0	0	0	0	copy fasta	REG1B	chr2	79080023	79092993
REG1B_chr2_79080023_79092993	0/0	t0005	275	1	0	1	0	0	0	copy fasta	REG1B	chr2	79080023	79092993
REG3A_chr2_79152006_79164753	1/1	t0001	281	433	96	74	206	13	42	copy fasta	REG3A	chr2	79152006	79164753
REG3A_chr2_79152006_79164753	0/0	t0002	281	2	2	0	0	0	0	copy fasta	REG3A	chr2	79152006	79164753
REG3A_chr2_79152006_79164753	0/0	t0003	281	1	0	0	0	1	0	copy fasta	REG3A	chr2	79152006	79164753
REG3G_chr2_79020702_79033501	0/0	t0001	409	158	35	24	78	4	17	copy fasta	REG3G	chr2	79020702	79033501
REG3G_chr2_79020702_79033501	0/1	t0002	409	148	18	33	77	6	13	copy fasta	REG3G	chr2	79020702	79033501
REG3G_chr2_79020702_79033501	0/0	t0003	409	83	24	5	40	6	8	copy fasta	REG3G	chr2	79020702	79033501
REG3G_chr2_79020702_79033501	1/0	t0004	409	65	13	8	32	2	9	copy fasta	REG3G	chr2	79020702	79033501
REG3G_chr2_79020702_79033501	0/0	t0005	409	4	4	0	0	0	0	copy fasta	REG3G	chr2	79020702	79033501
REG3G_chr2_79020702_79033501	0/0	t0006	409	2	0	2	0	0	0	copy fasta	REG3G	chr2	79020702	79033501
REG3G_chr2_79020702_79033501	0/0	t0007	409	1	0	0	1	0	0	copy fasta	REG3G	chr2	79020702	79033501
REG3G_chr2_79020702_79033501	0/0	t0008	409	1	0	0	1	0	0	copy fasta	REG3G	chr2	79020702	79033501
REG3G_chr2_79020702_79033501	0/0	t0009	409	1	0	0	1	0	0	copy fasta	REG3G	chr2	79020702	79033501
REG3G_chr2_79020702_79033501	0/0	t0010	409	1	0	0	0	0	1	copy fasta	REG3G	chr2	79020702	79033501
REG4_chr1_119789017_119816460	0/0	t0001	748	208	16	32	136	6	18	copy fasta	REG4	chr1	119789017	119816460
REG4_chr1_119789017_119816460	0/1	t0002	748	100	42	19	24	6	8	copy fasta	REG4	chr1	119789017	119816460
REG4_chr1_119789017_119816460	0/0	t0003	742	49	22	12	3	3	9	copy fasta	REG4	chr1	119789017	119816460
REG4_chr1_119789017_119816460	0/0	t0004	742	47	6	13	19	1	8	copy fasta	REG4	chr1	119789017	119816460
REG4_chr1_119789017_119816460	0/0	t0005	747	26	0	2	23	0	1	copy fasta	REG4	chr1	119789017	119816460
REG4_chr1_119789017_119816460	0/0	t0006	741	9	1	2	3	0	3	copy fasta	REG4	chr1	119789017	119816460
REG4_chr1_119789017_119816460	0/0	t0007	748	8	8	0	0	0	0	copy fasta	REG4	chr1	119789017	119816460
REG4_chr1_119789017_119816460	1/0	t0008	748	4	0	1	0	2	0	copy fasta	REG4	chr1	119789017	119816460
REG4_chr1_119789017_119816460	0/0	t0009	748	3	2	0	1	0	0	copy fasta	REG4	chr1	119789017	119816460
REG4_chr1_119789017_119816460	0/0	t0010	742	3	2	1	0	0	0	copy fasta	REG4	chr1	119789017	119816460
REG4_chr1_119789017_119816460	0/0	t0011	748	1	1	0	0	0	0	copy fasta	REG4	chr1	119789017	119816460
REG4_chr1_119789017_119816460	0/0	t0012	748	1	0	0	1	0	0	copy fasta	REG4	chr1	119789017	119816460
REG4_chr1_119789017_119816460	0/0	t0013	748	1	0	0	1	0	0	copy fasta	REG4	chr1	119789017	119816460
REG4_chr1_119789017_119816460	0/0	t0014	742	1	0	0	0	0	1	copy fasta	REG4	chr1	119789017	119816460
REG4_chr1_119789017_119816460	0/0	t0015	742	1	0	0	1	0	0	copy fasta	REG4	chr1	119789017	119816460
RELA_chr11_65648601_65667916	1/1	t0001	862	355	78	58	164	17	36	copy fasta	RELA	chr11	65648601	65667916
RELA_chr11_65648601_65667916	0/0	t0002	862	11	10	1	0	0	0	copy fasta	RELA	chr11	65648601	65667916
RELA_chr11_65648601_65667916	0/0	t0003	860	10	0	0	10	0	0	copy fasta	RELA	chr11	65648601	65667916
RELA_chr11_65648601_65667916	0/0	t0004	862	9	8	1	0	0	0	copy fasta	RELA	chr11	65648601	65667916
RELA_chr11_65648601_65667916	0/0	t0005	862	7	0	6	0	0	1	copy fasta	RELA	chr11	65648601	65667916