JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RELA_chr11_65648601_65667916	0/0	t0006	862	2	0	1	0	1	0	copy fasta	RELA	chr11	65648601	65667916
RELA_chr11_65648601_65667916	0/0	t0007	862	2	0	0	2	0	0	copy fasta	RELA	chr11	65648601	65667916
RELA_chr11_65648601_65667916	0/0	t0008	862	1	0	0	1	0	0	copy fasta	RELA	chr11	65648601	65667916
RELA_chr11_65648601_65667916	0/0	t0009	862	1	0	0	1	0	0	copy fasta	RELA	chr11	65648601	65667916
RELA_chr11_65648601_65667916	0/0	t0010	862	1	1	0	0	0	0	copy fasta	RELA	chr11	65648601	65667916
RELA_chr11_65648601_65667916	0/0	t0011	862	1	0	0	0	0	1	copy fasta	RELA	chr11	65648601	65667916
RELA_chr11_65648601_65667916	0/0	t0012	862	1	1	0	0	0	0	copy fasta	RELA	chr11	65648601	65667916
RELA_chr11_65648601_65667916	0/0	t0013	862	1	0	1	0	0	0	copy fasta	RELA	chr11	65648601	65667916
RELA_chr11_65648601_65667916	0/0	t0014	862	1	0	0	1	0	0	copy fasta	RELA	chr11	65648601	65667916
RELA_chr11_65648601_65667916	0/0	t0015	862	1	0	0	1	0	0	copy fasta	RELA	chr11	65648601	65667916
RELB_chr19_44996464_45043192	1/1	t0001	519	356	96	69	138	10	41	copy fasta	RELB	chr19	44996464	45043192
RELB_chr19_44996464_45043192	0/0	t0002	519	17	0	0	13	0	4	copy fasta	RELB	chr19	44996464	45043192
RELB_chr19_44996464_45043192	0/0	t0003	519	7	0	5	0	2	0	copy fasta	RELB	chr19	44996464	45043192
RELB_chr19_44996464_45043192	0/0	t0004	519	1	0	0	1	0	0	copy fasta	RELB	chr19	44996464	45043192
RELB_chr19_44996464_45043192	0/0	t0005	519	1	0	0	0	0	1	copy fasta	RELB	chr19	44996464	45043192
RELCH_chr18_62182255_62315249	0/0	t0001	4968	87	8	16	47	3	13	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	1/0	t0002	4967	65	20	14	18	5	7	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0003	4967	39	3	3	27	1	5	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0004	4954	23	0	0	23	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/1	t0005	4968	18	0	12	0	0	5	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0006	4966	16	15	1	0	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0007	4967	9	0	0	4	1	4	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0008	4967	9	5	1	0	1	2	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0009	4967	8	6	2	0	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0010	4967	6	6	0	0	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0011	4954	6	1	1	4	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0012	4968	4	3	1	0	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0013	4967	4	2	0	1	0	1	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0014	4968	3	3	0	0	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0015	4954	3	0	0	2	0	1	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0016	4954	2	2	0	0	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0017	4967	2	0	0	2	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0018	4967	2	2	0	0	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0019	4967	2	2	0	0	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0020	4966	2	2	0	0	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0021	4967	2	0	0	0	0	2	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0022	4967	2	0	1	1	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0023	4968	1	0	0	1	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0024	4968	1	0	0	1	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0025	4919	1	0	1	0	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0026	4967	1	0	0	1	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0027	4967	1	0	0	1	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0028	4967	1	0	0	0	1	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0029	4968	1	0	0	1	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0030	4967	1	0	0	0	1	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0031	4967	1	0	1	0	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0032	4966	1	0	0	1	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0033	4966	1	0	0	1	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0034	4968	1	1	0	0	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0035	4968	1	0	0	1	0	0	copy fasta	RELCH	chr18	62182255	62315249