JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RELCH_chr18_62182255_62315249	0/0	t0036	4967	1	0	1	0	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0037	4968	1	1	0	0	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0038	4967	1	0	1	0	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0039	4954	1	0	0	1	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0040	4954	1	0	0	0	0	1	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0041	4954	1	1	0	0	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0042	4954	1	0	0	1	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0043	4954	1	0	0	1	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0044	4967	1	1	0	0	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0045	4966	1	0	0	0	1	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0046	4967	1	1	0	0	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0047	4967	1	1	0	0	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	t0048	4967	1	0	0	0	0	1	copy fasta	RELCH	chr18	62182255	62315249
RELL1_chr4_37605634_37691376	0/1	t0001	2798	64	12	14	25	5	7	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0002	2798	36	2	6	26	0	2	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0003	2803	33	0	2	28	0	3	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0004	2802	31	3	12	0	7	9	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0005	2799	18	16	2	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0006	2789	13	0	4	6	0	3	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0007	2799	8	2	1	1	2	2	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0008	2800	7	5	1	0	0	1	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0009	2799	5	1	0	4	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0010	2803	4	0	0	4	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0011	2787	4	3	1	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0012	2793	4	4	0	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0013	2793	4	0	3	0	0	1	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0014	2788	4	0	0	1	0	3	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0015	2804	4	0	2	2	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0016	2797	3	0	2	1	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0017	2802	3	1	0	0	1	1	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0018	2800	3	1	2	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0019	2800	3	3	0	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0020	2802	3	3	0	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0021	2803	3	0	1	0	0	2	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0022	2798	2	0	0	2	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0023	2797	2	0	0	0	0	2	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0024	2799	2	0	0	2	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0025	2798	2	2	0	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0026	2798	2	1	1	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0027	2805	2	0	0	2	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0028	2802	2	1	0	1	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0029	2802	2	2	0	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0030	2803	2	0	1	0	0	1	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0031	2800	2	0	0	1	0	1	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0032	2803	2	0	0	2	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0033	2790	2	0	0	1	0	1	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0034	2804	2	0	0	2	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0035	2799	1	1	0	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0036	2815	1	1	0	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0037	2817	1	1	0	0	0	0	copy fasta	RELL1	chr4	37605634	37691376