JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RELL1_chr4_37605634_37691376	0/0	t0038	2798	1	0	0	1	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0039	2798	1	0	0	1	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0040	2799	1	0	0	1	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0041	2800	1	0	0	1	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0042	2800	1	0	1	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0043	2803	1	0	1	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0044	2804	1	1	0	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0045	2798	1	1	0	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0046	2799	1	1	0	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	1/0	t0047	2802	1	0	0	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0048	2799	1	1	0	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0049	2794	1	1	0	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0050	2800	1	1	0	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0051	2786	1	1	0	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0052	2803	1	0	0	1	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0053	2799	1	0	1	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0054	2800	1	0	0	1	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0055	2800	1	1	0	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0056	2801	1	1	0	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0057	2804	1	0	1	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0058	2801	1	1	0	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0059	2803	1	1	0	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0060	2804	1	0	0	1	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0061	2789	1	1	0	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0062	2791	1	1	0	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0063	2803	1	1	0	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0064	2803	1	0	0	1	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0065	2797	1	0	1	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0066	2798	1	1	0	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0067	2805	1	0	0	0	1	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0068	2796	1	0	1	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0069	2794	1	0	1	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0070	2802	1	0	0	1	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0071	2788	1	0	1	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0072	2790	1	0	1	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0073	2791	1	0	0	1	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0074	2789	1	0	0	1	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	t0075	2803	1	0	0	0	0	1	copy fasta	RELL1	chr4	37605634	37691376
RELL2_chr5_141631997_141646064	1/1	t0001	1624	316	76	50	141	10	37	copy fasta	RELL2	chr5	141631997	141646064
RELL2_chr5_141631997_141646064	0/0	t0002	1624	81	9	23	39	4	6	copy fasta	RELL2	chr5	141631997	141646064
RELL2_chr5_141631997_141646064	0/0	t0003	1624	4	0	0	4	0	0	copy fasta	RELL2	chr5	141631997	141646064
RELL2_chr5_141631997_141646064	0/0	t0004	1624	3	0	3	0	0	0	copy fasta	RELL2	chr5	141631997	141646064
RELL2_chr5_141631997_141646064	0/0	t0005	1624	3	3	0	0	0	0	copy fasta	RELL2	chr5	141631997	141646064
RELL2_chr5_141631997_141646064	0/0	t0006	1624	2	2	0	0	0	0	copy fasta	RELL2	chr5	141631997	141646064
RELL2_chr5_141631997_141646064	0/0	t0007	1624	2	1	1	0	0	0	copy fasta	RELL2	chr5	141631997	141646064
RELL2_chr5_141631997_141646064	0/0	t0008	1624	2	2	0	0	0	0	copy fasta	RELL2	chr5	141631997	141646064
RELL2_chr5_141631997_141646064	0/0	t0009	1624	1	1	0	0	0	0	copy fasta	RELL2	chr5	141631997	141646064
RELL2_chr5_141631997_141646064	0/0	t0010	1624	1	1	0	0	0	0	copy fasta	RELL2	chr5	141631997	141646064
RELL2_chr5_141631997_141646064	0/0	t0011	1624	1	1	0	0	0	0	copy fasta	RELL2	chr5	141631997	141646064
RELL2_chr5_141631997_141646064	0/0	t0012	1624	1	0	1	0	0	0	copy fasta	RELL2	chr5	141631997	141646064