JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AZIN1_chr8_102821308_102869163	0/0	t0022	2850	1	0	0	0	0	1	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	t0023	2850	1	0	0	1	0	0	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	t0024	2850	1	1	0	0	0	0	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	t0025	2850	1	0	1	0	0	0	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	t0026	2850	1	0	0	1	0	0	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	t0027	2850	1	0	0	0	0	1	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	t0028	2850	1	0	0	1	0	0	copy fasta	AZIN1	chr8	102821308	102869163
AZIN2_chr1_33076153_33128492	1/1	t0001	3858	154	37	38	51	6	20	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	t0002	3857	73	0	19	41	4	9	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	t0003	3858	15	0	0	14	0	1	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	t0004	3858	14	11	1	2	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	t0005	3858	11	0	4	7	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	t0006	3858	11	10	0	1	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	t0007	3858	6	6	0	0	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	t0008	3858	5	3	2	0	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	t0009	3858	5	5	0	0	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	t0010	3858	5	5	0	0	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	t0011	3858	5	4	1	0	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	t0012	3858	4	4	0	0	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	t0013	3858	2	2	0	0	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	t0014	3858	1	0	0	1	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	t0015	3858	1	0	0	1	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	t0016	3858	1	0	0	1	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	t0017	3858	1	0	0	1	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	t0018	3858	1	0	0	1	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	t0019	3858	1	0	0	1	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	t0020	3858	1	1	0	0	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	t0021	3858	1	1	0	0	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	t0022	3858	1	1	0	0	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	t0023	3858	1	0	1	0	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	t0024	3858	1	1	0	0	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	t0025	3858	1	1	0	0	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZU1_chr19_822837_837018	0/1	t0001	152	382	87	75	162	16	41	copy fasta	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	t0002	153	5	5	0	0	0	0	copy fasta	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	t0003	152	2	0	1	0	0	1	copy fasta	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	t0004	124	1	0	0	1	0	0	copy fasta	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	t0005	187	1	0	0	1	0	0	copy fasta	AZU1	chr19	822837	837018
B2M_chr15_44706517_44723145	0/1	t0001	584	276	49	62	119	14	31	copy fasta	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	t0002	584	55	7	12	25	1	10	copy fasta	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	t0003	584	48	26	4	12	1	5	copy fasta	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	t0004	584	4	4	0	0	0	0	copy fasta	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	t0005	584	1	0	0	0	0	1	copy fasta	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	t0006	584	1	0	0	0	0	1	copy fasta	B2M	chr15	44706517	44723145
B3GALNT1_chr3_161078883_161110349	1/1	t0001	2300	224	39	43	111	8	21	copy fasta	B3GALNT1	chr3	161078883	161110349
B3GALNT1_chr3_161078883_161110349	0/0	t0002	2300	96	18	18	45	4	11	copy fasta	B3GALNT1	chr3	161078883	161110349
B3GALNT1_chr3_161078883_161110349	0/0	t0003	2299	17	0	9	8	0	0	copy fasta	B3GALNT1	chr3	161078883	161110349
B3GALNT1_chr3_161078883_161110349	0/0	t0004	2299	14	5	0	9	0	0	copy fasta	B3GALNT1	chr3	161078883	161110349
B3GALNT1_chr3_161078883_161110349	0/0	t0005	2298	12	9	3	0	0	0	copy fasta	B3GALNT1	chr3	161078883	161110349
B3GALNT1_chr3_161078883_161110349	0/0	t0006	2300	6	6	0	0	0	0	copy fasta	B3GALNT1	chr3	161078883	161110349
B3GALNT1_chr3_161078883_161110349	0/0	t0007	2300	3	3	0	0	0	0	copy fasta	B3GALNT1	chr3	161078883	161110349