JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RELL2_chr5_141631997_141646064	0/0	t0013	1624	1	0	0	0	0	1	copy fasta	RELL2	chr5	141631997	141646064
RELN_chr7_103466789_103994658	0/1	t0001	1332	113	27	17	57	0	11	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	t0002	1326	30	17	5	7	0	1	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	t0003	1341	11	1	3	7	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	t0004	1338	6	4	0	2	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	t0005	1347	5	0	0	5	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	t0006	1332	4	4	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	t0007	1332	3	3	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	t0008	1326	2	2	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	t0009	1359	1	1	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	t0010	1344	1	1	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	t0011	1344	1	1	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	t0012	1338	1	1	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	t0013	1338	1	1	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	t0014	1332	1	1	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	t0015	1332	1	1	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	t0016	1326	1	1	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	t0017	1326	1	0	1	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	1/0	t0018	1326	1	0	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELT_chr11_73371399_73402474	1/1	t0001	2110	236	32	42	120	10	30	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	t0002	2110	37	30	3	0	1	3	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	t0003	2110	27	8	7	7	3	2	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	t0004	2110	15	15	0	0	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	t0005	2110	6	6	0	0	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	t0006	2110	4	1	0	0	3	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	t0007	2110	3	3	0	0	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	t0008	2110	2	0	2	0	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	t0009	2110	2	2	0	0	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	t0010	2110	1	0	0	1	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	t0011	2110	1	1	0	0	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	t0012	2110	1	1	0	0	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	t0013	2110	1	1	0	0	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	t0014	2110	1	0	0	1	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	t0015	2110	1	0	0	0	1	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	t0016	2110	1	0	0	1	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	t0017	2110	1	0	0	0	0	1	copy fasta	RELT	chr11	73371399	73402474
REL_chr2_60876574_60936612	0/0	t0001	9345	77	8	22	34	3	10	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0002	9342	25	2	14	1	3	5	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0003	9341	20	0	1	18	1	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0004	9343	14	1	8	0	3	2	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0005	9340	12	1	2	4	3	2	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0006	9345	12	12	0	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0007	9345	11	0	0	11	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0008	9340	6	0	3	0	1	2	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0009	9344	6	6	0	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0010	9342	5	5	0	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0011	9340	5	5	0	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0012	9340	4	1	3	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0013	9340	4	0	2	0	1	1	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	1/0	t0014	9345	4	0	2	0	0	1	copy fasta	REL	chr2	60876574	60936612