JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
REL_chr2_60876574_60936612	0/0	t0015	9345	4	4	0	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0016	9346	3	3	0	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0017	9343	3	3	0	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0018	9341	2	1	1	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0019	9345	2	0	0	2	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0020	9344	2	2	0	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0021	9344	2	2	0	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0022	9344	2	2	0	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0023	9345	2	2	0	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0024	9346	2	0	0	1	0	1	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0025	9345	2	0	0	2	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0026	9345	2	0	1	0	1	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0027	9345	2	0	0	2	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0028	9343	2	2	0	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0029	9341	2	0	0	2	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0030	9343	2	2	0	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0031	9340	1	0	1	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0032	9343	1	0	1	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/1	t0033	9340	1	0	0	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0034	9340	1	0	1	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0035	9345	1	0	0	1	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0036	9344	1	1	0	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0037	9344	1	1	0	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0038	9344	1	1	0	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0039	9345	1	0	0	1	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0040	9344	1	1	0	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0041	9344	1	1	0	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0042	9340	1	0	1	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0043	9344	1	1	0	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0044	9345	1	0	1	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0045	9346	1	0	0	0	0	1	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0046	9345	1	0	0	1	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0047	9345	1	1	0	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0048	9345	1	1	0	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0049	9345	1	1	0	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0050	9344	1	0	0	1	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0051	9345	1	1	0	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0052	9345	1	0	1	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0053	9344	1	0	0	0	0	1	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0054	9345	1	0	1	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0055	9344	1	0	0	1	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0056	9341	1	0	0	1	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0057	9342	1	0	0	1	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0058	9341	1	0	0	1	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0059	9341	1	0	0	1	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0060	9341	1	0	0	1	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0061	9341	1	0	0	1	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0062	9345	1	0	1	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0063	9343	1	1	0	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	t0064	9340	1	0	1	0	0	0	copy fasta	REL	chr2	60876574	60936612