JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
REL_chr2_60876574_60936612	0/0	t0065	9344	1	1	0	0	0	0	copy fasta	REL	chr2	60876574	60936612
REM1_chr20_31470288_31489895	1/1	t0001	764	312	70	77	108	18	37	copy fasta	REM1	chr20	31470288	31489895
REM1_chr20_31470288_31489895	0/0	t0002	763	16	0	0	16	0	0	copy fasta	REM1	chr20	31470288	31489895
REM1_chr20_31470288_31489895	0/0	t0003	764	6	6	0	0	0	0	copy fasta	REM1	chr20	31470288	31489895
REM1_chr20_31470288_31489895	0/0	t0004	763	5	4	0	0	0	1	copy fasta	REM1	chr20	31470288	31489895
REM1_chr20_31470288_31489895	0/0	t0005	764	3	3	0	0	0	0	copy fasta	REM1	chr20	31470288	31489895
REM1_chr20_31470288_31489895	0/0	t0006	764	1	0	1	0	0	0	copy fasta	REM1	chr20	31470288	31489895
REM1_chr20_31470288_31489895	0/0	t0007	764	1	1	0	0	0	0	copy fasta	REM1	chr20	31470288	31489895
REM2_chr14_22878222_22892678	1/1	t0001	836	347	89	65	146	8	37	copy fasta	REM2	chr14	22878222	22892678
REM2_chr14_22878222_22892678	0/0	t0002	830	27	9	14	1	0	3	copy fasta	REM2	chr14	22878222	22892678
REM2_chr14_22878222_22892678	0/0	t0003	824	8	0	2	6	0	0	copy fasta	REM2	chr14	22878222	22892678
REM2_chr14_22878222_22892678	0/0	t0004	836	4	0	0	4	0	0	copy fasta	REM2	chr14	22878222	22892678
REM2_chr14_22878222_22892678	0/0	t0005	836	2	0	0	0	0	2	copy fasta	REM2	chr14	22878222	22892678
REM2_chr14_22878222_22892678	0/0	t0006	836	1	0	0	1	0	0	copy fasta	REM2	chr14	22878222	22892678
REM2_chr14_22878222_22892678	0/0	t0007	836	1	1	0	0	0	0	copy fasta	REM2	chr14	22878222	22892678
REM2_chr14_22878222_22892678	0/0	t0008	836	1	0	1	0	0	0	copy fasta	REM2	chr14	22878222	22892678
REM2_chr14_22878222_22892678	0/0	t0009	830	1	1	0	0	0	0	copy fasta	REM2	chr14	22878222	22892678
RENBP_chrX_153930269_153949643	1/1	t0001	51	296	78	51	128	9	28	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	t0002	52	1	0	0	1	0	0	copy fasta	RENBP	chrX	153930269	153949643
REN_chr1_204149819_204171337	1/1	t0001	242	430	96	76	198	12	46	copy fasta	REN	chr1	204149819	204171337
REN_chr1_204149819_204171337	0/0	t0002	242	1	1	0	0	0	0	copy fasta	REN	chr1	204149819	204171337
REN_chr1_204149819_204171337	0/0	t0003	242	1	1	0	0	0	0	copy fasta	REN	chr1	204149819	204171337
REP15_chr12_27691447_27702596	1/1	t0001	440	366	67	71	176	14	36	copy fasta	REP15	chr12	27691447	27702596
REP15_chr12_27691447_27702596	0/0	t0002	440	36	0	1	35	0	0	copy fasta	REP15	chr12	27691447	27702596
REP15_chr12_27691447_27702596	0/0	t0003	440	15	12	3	0	0	0	copy fasta	REP15	chr12	27691447	27702596
REP15_chr12_27691447_27702596	0/0	t0004	440	5	0	0	4	0	1	copy fasta	REP15	chr12	27691447	27702596
REP15_chr12_27691447_27702596	0/0	t0005	441	4	4	0	0	0	0	copy fasta	REP15	chr12	27691447	27702596
REP15_chr12_27691447_27702596	0/0	t0006	440	3	0	0	0	0	3	copy fasta	REP15	chr12	27691447	27702596
REP15_chr12_27691447_27702596	0/0	t0007	441	3	2	1	0	0	0	copy fasta	REP15	chr12	27691447	27702596
REP15_chr12_27691447_27702596	0/0	t0008	440	2	2	0	0	0	0	copy fasta	REP15	chr12	27691447	27702596
REP15_chr12_27691447_27702596	0/0	t0009	441	2	2	0	0	0	0	copy fasta	REP15	chr12	27691447	27702596
REP15_chr12_27691447_27702596	0/0	t0010	440	2	2	0	0	0	0	copy fasta	REP15	chr12	27691447	27702596
REP15_chr12_27691447_27702596	0/0	t0011	440	1	1	0	0	0	0	copy fasta	REP15	chr12	27691447	27702596
REP15_chr12_27691447_27702596	0/0	t0012	440	1	0	1	0	0	0	copy fasta	REP15	chr12	27691447	27702596
REP15_chr12_27691447_27702596	0/0	t0013	440	1	0	0	1	0	0	copy fasta	REP15	chr12	27691447	27702596
REP15_chr12_27691447_27702596	0/0	t0014	441	1	0	1	0	0	0	copy fasta	REP15	chr12	27691447	27702596
REPIN1_chr7_150363822_150379039	1/0	t0001	1256	199	43	49	67	12	27	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/1	t0002	1256	151	30	19	86	2	13	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	t0003	1256	11	10	1	0	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	t0004	1256	9	0	3	6	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	t0005	1256	7	6	1	0	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	t0006	1256	5	0	0	3	0	2	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	t0007	1256	4	4	0	0	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	t0008	1256	3	0	0	0	1	2	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	t0009	1256	2	0	0	0	2	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	t0010	1256	2	0	2	0	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	t0011	1256	1	0	1	0	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	t0012	1256	1	0	0	0	1	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	t0013	1256	1	1	0	0	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	t0014	1256	1	1	0	0	0	0	copy fasta	REPIN1	chr7	150363822	150379039