JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
REPIN1_chr7_150363822_150379039	0/0	t0015	1256	1	0	0	1	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	t0016	1256	1	0	0	1	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	t0017	1256	1	1	0	0	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPS1_chr6_138898493_138993253	1/0	t0001	2143	189	34	29	98	5	22	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/1	t0002	2143	69	6	25	25	3	9	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	t0003	2131	64	26	2	34	0	2	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	t0004	2138	26	13	2	10	0	1	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	t0005	2137	5	0	0	5	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	t0006	2149	3	3	0	0	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	t0007	2143	3	0	1	0	2	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	t0008	2141	3	0	0	3	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	t0009	2143	2	2	0	0	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	t0010	2155	2	0	0	0	2	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	t0011	2141	2	0	0	1	0	1	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	t0012	2138	2	1	1	0	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	t0013	2143	2	0	0	2	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	t0014	2131	2	2	0	0	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	t0015	2131	2	2	0	0	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	t0016	2143	1	0	0	1	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	t0017	2155	1	0	0	0	0	1	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	t0018	2149	1	0	0	1	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	t0019	2149	1	0	0	1	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	t0020	2143	1	0	0	1	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	t0021	2143	1	0	1	0	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	t0022	2143	1	1	0	0	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	t0023	2143	1	1	0	0	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	t0024	2143	1	0	0	1	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	t0025	2143	1	0	1	0	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	t0026	2131	1	0	0	1	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	t0027	2131	1	0	0	1	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	t0028	2131	1	1	0	0	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	t0029	2143	1	0	0	1	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS2_chrX_16941658_17158272	0/0	t0001	5996	79	15	13	41	3	7	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/1	t0002	5996	31	0	4	13	1	12	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	t0003	5996	9	2	1	1	2	3	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	t0004	5996	9	7	2	0	0	0	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	t0005	5996	9	0	3	3	1	2	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	t0006	6008	3	2	1	0	0	0	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	t0007	5995	2	0	0	1	0	1	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	t0008	5996	2	2	0	0	0	0	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	t0009	6017	2	2	0	0	0	0	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	t0010	6017	2	2	0	0	0	0	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	t0011	5997	1	0	0	0	0	1	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	t0012	5996	1	0	0	0	0	1	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	t0013	5981	1	0	0	1	0	0	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	1/0	t0014	5996	1	0	0	0	0	0	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	t0015	5994	1	0	1	0	0	0	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	t0016	5996	1	1	0	0	0	0	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	t0017	5996	1	0	0	1	0	0	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	t0018	5996	1	1	0	0	0	0	copy fasta	REPS2	chrX	16941658	17158272