JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
REPS2_chrX_16941658_17158272	0/0	t0019	5996	1	0	0	1	0	0	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	t0020	5996	1	1	0	0	0	0	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	t0021	5996	1	0	0	1	0	0	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	t0022	5996	1	0	1	0	0	0	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	t0023	5996	1	0	1	0	0	0	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	t0024	5997	1	0	0	1	0	0	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	t0025	5996	1	1	0	0	0	0	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	t0026	5997	1	0	0	0	0	1	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	t0027	5999	1	1	0	0	0	0	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	t0028	6014	1	1	0	0	0	0	copy fasta	REPS2	chrX	16941658	17158272
RER1_chr1_2386841_2410436	0/1	t0001	2438	121	26	34	37	10	13	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0002	2438	96	3	17	62	5	9	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	1/0	t0003	2438	45	15	7	16	1	5	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0004	2438	17	15	2	0	0	0	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0005	2438	16	4	3	6	0	3	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0006	2439	9	0	4	3	0	2	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0007	2439	5	2	0	1	0	2	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0008	2439	5	1	1	1	0	2	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0009	2438	3	0	0	0	0	3	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0010	2438	3	3	0	0	0	0	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0011	2438	2	0	0	0	0	2	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0012	2438	2	2	0	0	0	0	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0013	2439	2	0	2	0	0	0	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0014	2438	2	2	0	0	0	0	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0015	2439	2	0	0	2	0	0	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0016	2438	2	0	0	2	0	0	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0017	2438	2	2	0	0	0	0	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0018	2438	2	0	0	2	0	0	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0019	2438	2	2	0	0	0	0	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0020	2427	1	0	0	1	0	0	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0021	2438	1	0	0	1	0	0	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0022	2438	1	0	0	1	0	0	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0023	2439	1	1	0	0	0	0	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0024	2438	1	1	0	0	0	0	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0025	2438	1	1	0	0	0	0	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0026	2438	1	0	0	0	0	1	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0027	2438	1	1	0	0	0	0	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0028	2438	1	0	1	0	0	0	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0029	2438	1	0	1	0	0	0	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0030	2438	1	0	0	1	0	0	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0031	2438	1	0	0	0	0	1	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0032	2438	1	0	0	0	0	1	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0033	2438	1	1	0	0	0	0	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0034	2438	1	0	0	0	1	0	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	t0035	2438	1	0	0	0	1	0	copy fasta	RER1	chr1	2386841	2410436
RERE_chr1_8347404_8822640	0/0	t0001	3311	44	12	6	19	2	5	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0002	3308	36	7	11	9	3	6	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0003	3310	28	3	4	15	1	5	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/1	t0004	3311	18	1	5	8	1	2	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0005	3309	14	9	3	0	0	2	copy fasta	RERE	chr1	8347404	8822640