JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RERE_chr1_8347404_8822640	0/0	t0006	3309	7	3	0	1	0	3	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0007	3310	6	6	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0008	3310	6	2	3	0	1	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0009	3310	5	5	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0010	3310	3	2	1	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0011	3310	3	1	0	1	0	1	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0012	3311	2	2	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0013	3310	2	1	0	0	0	1	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0014	3309	2	2	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	1/0	t0015	3309	2	1	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0016	3311	1	0	1	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0017	3311	1	0	0	0	0	1	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0018	3310	1	1	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0019	3310	1	1	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0020	3310	1	1	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0021	3314	1	1	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0022	3310	1	1	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0023	3310	1	0	0	1	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0024	3310	1	0	0	1	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0025	3309	1	0	0	0	0	1	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0026	3309	1	1	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0027	3309	1	1	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0028	3309	1	1	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0029	3313	1	1	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0030	3310	1	0	0	1	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0031	3310	1	0	0	1	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0032	3309	1	1	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0033	3308	1	1	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0034	3308	1	1	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0035	3308	1	0	0	0	0	1	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0036	3311	1	0	0	1	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0037	3310	1	0	0	0	1	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0038	3310	1	0	0	0	1	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0039	3311	1	1	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0040	3310	1	1	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	t0041	3311	1	1	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERGL_chr12_18075869_18095193	1/1	t0001	376	372	95	60	172	11	32	copy fasta	RERGL	chr12	18075869	18095193
RERGL_chr12_18075869_18095193	0/0	t0002	376	18	0	8	2	1	7	copy fasta	RERGL	chr12	18075869	18095193
RERGL_chr12_18075869_18095193	0/0	t0003	376	11	1	5	0	4	1	copy fasta	RERGL	chr12	18075869	18095193
RERGL_chr12_18075869_18095193	0/0	t0004	376	1	0	1	0	0	0	copy fasta	RERGL	chr12	18075869	18095193
RERG_chr12_15102783_15226417	1/0	t0001	1665	234	56	33	108	9	27	copy fasta	RERG	chr12	15102783	15226417
RERG_chr12_15102783_15226417	0/0	t0002	1665	38	9	10	16	1	2	copy fasta	RERG	chr12	15102783	15226417
RERG_chr12_15102783_15226417	0/0	t0003	1665	16	14	2	0	0	0	copy fasta	RERG	chr12	15102783	15226417
RERG_chr12_15102783_15226417	0/0	t0004	1667	3	3	0	0	0	0	copy fasta	RERG	chr12	15102783	15226417
RERG_chr12_15102783_15226417	0/1	t0005	1665	2	0	1	0	0	0	copy fasta	RERG	chr12	15102783	15226417
RERG_chr12_15102783_15226417	0/0	t0006	1665	2	0	0	0	0	2	copy fasta	RERG	chr12	15102783	15226417
RERG_chr12_15102783_15226417	0/0	t0007	1665	1	0	0	1	0	0	copy fasta	RERG	chr12	15102783	15226417
RERG_chr12_15102783_15226417	0/0	t0008	1665	1	0	0	1	0	0	copy fasta	RERG	chr12	15102783	15226417
RERG_chr12_15102783_15226417	0/0	t0009	1665	1	0	0	0	0	1	copy fasta	RERG	chr12	15102783	15226417
RERG_chr12_15102783_15226417	0/0	t0010	1665	1	1	0	0	0	0	copy fasta	RERG	chr12	15102783	15226417