JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RERG_chr12_15102783_15226417	0/0	t0011	1665	1	1	0	0	0	0	copy fasta	RERG	chr12	15102783	15226417
RESF1_chr12_31954415_31998107	1/1	t0001	991	394	73	64	203	15	37	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	t0002	991	22	1	11	4	1	5	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	t0003	991	17	13	1	0	2	1	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	t0004	991	7	0	0	7	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	t0005	991	6	6	0	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	t0006	991	2	2	0	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	t0007	991	1	0	0	1	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	t0008	991	1	0	0	1	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	t0009	991	1	1	0	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	t0010	991	1	0	0	0	0	1	copy fasta	RESF1	chr12	31954415	31998107
RESP18_chr2_219322407_219338177	1/1	t0001	111	420	96	80	178	16	48	copy fasta	RESP18	chr2	219322407	219338177
REST_chr4_56902900_56940844	0/0	t0001	4016	107	20	13	59	2	13	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0002	4015	77	19	18	37	0	3	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	1/0	t0003	4016	72	1	7	51	3	9	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/1	t0004	4015	28	1	15	3	1	7	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0005	4014	22	0	5	13	2	2	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0006	4017	19	4	5	1	1	8	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0007	4016	18	0	4	13	1	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0008	4017	11	11	0	0	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0009	4014	8	8	0	0	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0010	4018	7	7	0	0	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0011	4013	5	3	2	0	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0012	4016	3	0	0	3	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0013	4016	2	2	0	0	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0014	4016	2	2	0	0	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0015	4016	2	2	0	0	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0016	4017	2	0	1	0	1	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0017	4015	1	0	0	1	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0018	4016	1	0	1	0	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0019	4016	1	0	0	1	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0020	4017	1	0	0	0	0	1	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0021	4015	1	0	1	0	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0022	4016	1	1	0	0	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0023	4015	1	0	0	0	0	1	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0024	4015	1	0	0	1	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0025	4014	1	1	0	0	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0026	4014	1	1	0	0	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0027	4017	1	1	0	0	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0028	4016	1	0	1	0	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0029	4016	1	0	0	1	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0030	4016	1	0	1	0	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0031	4016	1	1	0	0	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0032	4016	1	0	0	1	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0033	4017	1	1	0	0	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0034	4017	1	0	0	1	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0035	4016	1	1	0	0	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0036	4017	1	0	0	0	1	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0037	4017	1	0	1	0	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	t0038	4017	1	1	0	0	0	0	copy fasta	REST	chr4	56902900	56940844