JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
REST_chr4_56902900_56940844	0/0	t0039	4015	1	0	1	0	0	0	copy fasta	REST	chr4	56902900	56940844
RETNLB_chr3_108750638_108762410	0/0	t0001	366	152	27	17	98	0	10	copy fasta	RETNLB	chr3	108750638	108762410
RETNLB_chr3_108750638_108762410	1/0	t0002	366	134	49	41	7	11	25	copy fasta	RETNLB	chr3	108750638	108762410
RETNLB_chr3_108750638_108762410	0/0	t0003	366	132	6	15	102	1	8	copy fasta	RETNLB	chr3	108750638	108762410
RETNLB_chr3_108750638_108762410	0/1	t0004	366	21	7	3	0	4	6	copy fasta	RETNLB	chr3	108750638	108762410
RETNLB_chr3_108750638_108762410	0/0	t0005	366	9	9	0	0	0	0	copy fasta	RETNLB	chr3	108750638	108762410
RETNLB_chr3_108750638_108762410	0/0	t0006	366	2	0	0	2	0	0	copy fasta	RETNLB	chr3	108750638	108762410
RETNLB_chr3_108750638_108762410	0/0	t0007	366	1	0	0	0	0	1	copy fasta	RETNLB	chr3	108750638	108762410
RETNLB_chr3_108750638_108762410	0/0	t0008	366	1	0	0	1	0	0	copy fasta	RETNLB	chr3	108750638	108762410
RETN_chr19_7664049_7675455	0/1	t0001	181	340	29	80	172	17	41	copy fasta	RETN	chr19	7664049	7675455
RETN_chr19_7664049_7675455	0/0	t0002	178	59	50	2	5	1	1	copy fasta	RETN	chr19	7664049	7675455
RETN_chr19_7664049_7675455	0/0	t0003	181	41	12	0	25	0	4	copy fasta	RETN	chr19	7664049	7675455
RETN_chr19_7664049_7675455	1/0	t0004	190	7	0	0	6	0	0	copy fasta	RETN	chr19	7664049	7675455
RETN_chr19_7664049_7675455	0/0	t0005	184	4	4	0	0	0	0	copy fasta	RETN	chr19	7664049	7675455
RETN_chr19_7664049_7675455	0/0	t0006	181	3	0	0	0	0	3	copy fasta	RETN	chr19	7664049	7675455
RETN_chr19_7664049_7675455	0/0	t0007	181	1	1	0	0	0	0	copy fasta	RETN	chr19	7664049	7675455
RETN_chr19_7664049_7675455	0/0	t0008	178	1	1	0	0	0	0	copy fasta	RETN	chr19	7664049	7675455
RETN_chr19_7664049_7675455	0/0	t0009	181	1	1	0	0	0	0	copy fasta	RETN	chr19	7664049	7675455
RETN_chr19_7664049_7675455	0/0	t0010	184	1	0	0	0	0	1	copy fasta	RETN	chr19	7664049	7675455
RETREG1_chr5_16468053_16621997	0/0	t0001	1715	81	27	11	35	3	5	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	0/0	t0002	1715	68	12	8	30	1	17	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	0/1	t0003	1716	62	10	14	23	4	10	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	0/0	t0004	1715	20	3	6	10	0	1	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	0/0	t0005	1716	14	12	2	0	0	0	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	0/0	t0006	1716	14	0	5	5	2	2	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	0/0	t0007	1716	10	8	1	0	0	1	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	1/0	t0008	1715	7	3	1	2	0	0	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	0/0	t0009	1716	5	5	0	0	0	0	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	0/0	t0010	1716	3	3	0	0	0	0	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	0/0	t0011	1715	2	0	0	2	0	0	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	0/0	t0012	1716	2	2	0	0	0	0	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	0/0	t0013	1716	1	0	0	1	0	0	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	0/0	t0014	1717	1	1	0	0	0	0	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	0/0	t0015	1715	1	0	1	0	0	0	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	0/0	t0016	1716	1	1	0	0	0	0	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	0/0	t0017	1716	1	1	0	0	0	0	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	0/0	t0018	1715	1	0	1	0	0	0	copy fasta	RETREG1	chr5	16468053	16621997
RETREG2_chr2_219173275_219190475	0/0	t0001	2931	83	12	18	38	7	8	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0002	2924	78	6	14	56	1	1	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0003	2926	64	2	11	36	3	12	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0004	2925	35	0	6	21	3	5	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/1	t0005	2932	34	10	5	13	0	5	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0006	2924	20	13	2	0	0	5	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0007	2924	15	14	1	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0008	2925	13	1	1	10	0	1	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0009	2925	12	7	2	2	0	1	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0010	2930	10	1	0	7	0	2	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0011	2927	6	0	2	3	1	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0012	2924	6	6	0	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0013	2926	3	3	0	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475