JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RETREG2_chr2_219173275_219190475	0/0	t0014	2925	3	3	0	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	1/0	t0015	2925	3	2	0	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0016	2924	3	0	2	0	0	1	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0017	2924	2	2	0	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0018	2926	2	0	2	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0019	2927	2	0	1	1	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0020	2924	2	0	0	2	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0021	2932	2	2	0	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0022	2923	2	0	1	0	0	1	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0023	2925	2	1	0	0	0	1	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0024	2924	2	2	0	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0025	2931	1	0	0	0	0	1	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0026	2926	1	0	0	1	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0027	2925	1	1	0	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0028	2924	1	1	0	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0029	2924	1	1	0	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0030	2924	1	0	0	1	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0031	2925	1	0	0	1	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0032	2924	1	0	0	1	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0033	2924	1	0	0	1	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0034	2926	1	0	0	1	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0035	2924	1	0	0	1	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0036	2924	1	1	0	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0037	2931	1	1	0	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0038	2931	1	0	0	1	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0039	2931	1	0	0	1	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0040	2924	1	0	1	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0041	2931	1	1	0	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0042	2925	1	1	0	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0043	2925	1	1	0	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0044	2931	1	0	0	0	0	1	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0045	2931	1	0	0	0	0	1	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0046	2925	1	0	0	1	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0047	2954	1	1	0	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0048	2931	1	0	0	1	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0049	2931	1	0	0	0	1	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	t0050	2924	1	0	1	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG3_chr17_42574515_42614374	0/1	t0001	2355	115	12	27	63	3	9	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	t0002	2355	106	9	11	67	4	15	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	t0003	2355	63	25	24	1	3	10	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	1/0	t0004	2349	17	12	2	0	1	1	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	t0005	2354	13	12	1	0	0	0	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	t0006	2353	8	5	3	0	0	0	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	t0007	2356	4	0	0	0	0	4	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	t0008	2354	4	4	0	0	0	0	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	t0009	2354	4	4	0	0	0	0	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	t0010	2355	3	0	1	0	1	1	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	t0011	2355	3	0	2	0	0	1	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	t0012	2354	2	0	0	2	0	0	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	t0013	2354	2	0	0	2	0	0	copy fasta	RETREG3	chr17	42574515	42614374