JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RETREG3_chr17_42574515_42614374	0/0	t0014	2356	2	2	0	0	0	0	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	t0015	2349	2	1	0	1	0	0	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	t0016	2354	1	1	0	0	0	0	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	t0017	2355	1	0	0	1	0	0	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	t0018	2356	1	0	0	0	0	1	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	t0019	2349	1	0	0	0	0	1	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	t0020	2354	1	0	1	0	0	0	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	t0021	2355	1	1	0	0	0	0	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	t0022	2355	1	1	0	0	0	0	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	t0023	2355	1	0	0	1	0	0	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	t0024	2355	1	0	0	1	0	0	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	t0025	2355	1	0	0	0	0	1	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	t0026	2356	1	1	0	0	0	0	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	t0027	2349	1	0	0	1	0	0	copy fasta	RETREG3	chr17	42574515	42614374
RETSAT_chr2_85336955_85359528	0/0	t0001	1309	180	21	44	83	9	23	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	t0002	1309	90	28	7	50	3	2	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	t0003	1309	31	0	3	12	2	14	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	t0004	1310	25	20	4	0	1	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	1/1	t0005	1309	20	5	9	0	1	3	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	t0006	1309	20	18	2	0	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	t0007	1309	8	0	0	8	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	t0008	1309	2	2	0	0	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	t0009	1309	2	0	0	2	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	t0010	1309	2	0	0	0	0	2	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	t0011	1309	1	0	0	1	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	t0012	1309	1	0	1	0	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	t0013	1309	1	1	0	0	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	t0014	1309	1	1	0	0	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RET_chr10_43072069_43135351	0/0	t0001	2273	137	57	23	41	6	10	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	1/0	t0002	2273	86	3	16	57	1	8	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	t0003	2273	56	11	14	15	7	9	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/1	t0004	2273	53	0	11	29	3	9	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	t0005	2273	23	16	6	1	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	t0006	2273	7	1	2	0	0	4	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	t0007	2273	3	3	0	0	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	t0008	2273	3	3	0	0	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	t0009	2273	2	0	1	0	1	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	t0010	2273	2	0	0	2	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	t0011	2273	1	0	0	1	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	t0012	2273	1	0	0	1	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	t0013	2273	1	0	0	1	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	t0014	2273	1	0	1	0	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	t0015	2273	1	0	1	0	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	t0016	2273	1	0	0	1	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	t0017	2273	1	0	0	0	0	1	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	t0018	2273	1	0	1	0	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	t0019	2273	1	0	0	0	0	1	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	t0020	2273	1	0	0	1	0	0	copy fasta	RET	chr10	43072069	43135351
REV1_chr2_99395477_99495017	1/1	t0001	976	236	80	53	65	9	27	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	t0002	972	45	6	17	20	1	1	copy fasta	REV1	chr2	99395477	99495017