Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACER3_chr11_76855918_77031797	0/0	t0117	6533	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0118	6531	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0119	6531	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0120	6532	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0121	6524	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0122	6526	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0123	6525	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0124	6531	1	0	1	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0125	6530	1	0	1	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0126	6528	1	0	1	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/1	t0127	6528	1	0	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0128	6527	1	0	1	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0129	6515	1	0	1	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0130	6525	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0131	6530	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0132	6528	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0133	6511	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0134	6531	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0135	6525	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0136	6524	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0137	6504	1	0	1	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0138	6511	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0139	6514	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0140	6506	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0141	6535	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0142	6529	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0143	6525	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0144	6517	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0145	6505	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0146	6506	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0147	6527	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0148	6526	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0149	6522	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0150	6518	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0151	6512	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0152	6525	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0153	6508	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0154	6514	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACE_chr17_63472061_63503373	0/1	t0001	1044	184	41	41	69	5	27	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	1/0	t0002	1042	138	9	30	76	5	17	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	t0003	1042	29	27	2	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	t0004	1042	5	5	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	t0005	1042	3	0	1	0	2	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	t0006	1044	3	0	0	3	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	t0007	1042	2	2	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	t0008	1042	2	2	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	t0009	1044	2	2	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	t0010	1044	2	0	0	2	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	t0011	1042	1	1	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	t0012	1042	1	1	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373