JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
REV1_chr2_99395477_99495017	0/0	t0003	976	33	1	6	24	0	2	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	t0004	972	4	0	0	4	0	0	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	t0005	976	1	0	0	0	0	1	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	t0006	976	1	1	0	0	0	0	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	t0007	976	1	0	0	0	0	1	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	t0008	976	1	0	0	1	0	0	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	t0009	972	1	1	0	0	0	0	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	t0010	976	1	1	0	0	0	0	copy fasta	REV1	chr2	99395477	99495017
REV3L_chr6_111294033_111488218	0/0	t0001	1311	175	31	38	82	5	19	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	1/0	t0002	1314	53	13	6	19	4	10	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	t0003	1314	34	19	10	4	0	1	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/1	t0004	1311	19	2	12	0	1	3	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	t0005	1314	1	1	0	0	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	t0006	1314	1	1	0	0	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	t0007	1311	1	0	0	0	0	1	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	t0008	1311	1	1	0	0	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	t0009	1311	1	0	0	1	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	t0010	1311	1	1	0	0	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	t0011	1314	1	1	0	0	0	0	copy fasta	REV3L	chr6	111294033	111488218
REX1BD_chr19_18583798_18597337	0/1	t0001	162	250	50	45	124	7	23	copy fasta	REX1BD	chr19	18583798	18597337
REX1BD_chr19_18583798_18597337	1/0	t0002	162	156	28	27	74	3	23	copy fasta	REX1BD	chr19	18583798	18597337
REX1BD_chr19_18583798_18597337	0/0	t0003	162	9	8	1	0	0	0	copy fasta	REX1BD	chr19	18583798	18597337
REX1BD_chr19_18583798_18597337	0/0	t0004	162	6	6	0	0	0	0	copy fasta	REX1BD	chr19	18583798	18597337
REX1BD_chr19_18583798_18597337	0/0	t0005	162	2	2	0	0	0	0	copy fasta	REX1BD	chr19	18583798	18597337
REX1BD_chr19_18583798_18597337	0/0	t0006	158	1	0	1	0	0	0	copy fasta	REX1BD	chr19	18583798	18597337
REXO1_chr19_1810248_1853483	1/1	t0001	944	342	73	61	154	16	36	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	t0002	944	14	14	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	t0003	944	5	5	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	t0004	947	5	0	5	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	t0005	944	3	0	0	3	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	t0006	944	3	0	0	3	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	t0007	944	2	0	0	2	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	t0008	944	1	1	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	t0009	944	1	0	0	1	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	t0010	947	1	0	1	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	t0011	944	1	0	1	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	t0012	944	1	1	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	t0013	944	1	0	0	1	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO2_chr11_114434467_114455279	1/1	t0001	367	427	90	79	206	11	39	copy fasta	REXO2	chr11	114434467	114455279
REXO2_chr11_114434467_114455279	0/0	t0002	367	9	6	1	0	1	1	copy fasta	REXO2	chr11	114434467	114455279
REXO2_chr11_114434467_114455279	0/0	t0003	367	2	0	0	0	2	0	copy fasta	REXO2	chr11	114434467	114455279
REXO4_chr9_133401062_133423010	1/1	t0001	1058	378	69	67	188	15	37	copy fasta	REXO4	chr9	133401062	133423010
REXO4_chr9_133401062_133423010	0/0	t0002	1058	13	5	5	0	1	2	copy fasta	REXO4	chr9	133401062	133423010
REXO4_chr9_133401062_133423010	0/0	t0003	1058	9	0	2	5	0	2	copy fasta	REXO4	chr9	133401062	133423010
REXO4_chr9_133401062_133423010	0/0	t0004	1058	7	7	0	0	0	0	copy fasta	REXO4	chr9	133401062	133423010
REXO4_chr9_133401062_133423010	0/0	t0005	1058	6	6	0	0	0	0	copy fasta	REXO4	chr9	133401062	133423010
REXO4_chr9_133401062_133423010	0/0	t0006	1058	2	2	0	0	0	0	copy fasta	REXO4	chr9	133401062	133423010
REXO4_chr9_133401062_133423010	0/0	t0007	1058	2	0	1	0	0	1	copy fasta	REXO4	chr9	133401062	133423010
REXO4_chr9_133401062_133423010	0/0	t0008	1058	2	0	0	2	0	0	copy fasta	REXO4	chr9	133401062	133423010
REXO4_chr9_133401062_133423010	0/0	t0009	1058	2	2	0	0	0	0	copy fasta	REXO4	chr9	133401062	133423010