JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
REXO4_chr9_133401062_133423010	0/0	t0010	1058	1	0	1	0	0	0	copy fasta	REXO4	chr9	133401062	133423010
REXO4_chr9_133401062_133423010	0/0	t0011	1058	1	1	0	0	0	0	copy fasta	REXO4	chr9	133401062	133423010
REXO4_chr9_133401062_133423010	0/0	t0012	1058	1	1	0	0	0	0	copy fasta	REXO4	chr9	133401062	133423010
REXO4_chr9_133401062_133423010	0/0	t0013	1058	1	1	0	0	0	0	copy fasta	REXO4	chr9	133401062	133423010
REXO4_chr9_133401062_133423010	0/0	t0014	1058	1	1	0	0	0	0	copy fasta	REXO4	chr9	133401062	133423010
REXO4_chr9_133401062_133423010	0/0	t0015	1058	1	0	0	1	0	0	copy fasta	REXO4	chr9	133401062	133423010
REXO4_chr9_133401062_133423010	0/0	t0016	1058	1	1	0	0	0	0	copy fasta	REXO4	chr9	133401062	133423010
REXO5_chr16_20801527_20854665	1/1	t0001	367	271	62	34	142	7	24	copy fasta	REXO5	chr16	20801527	20854665
REXO5_chr16_20801527_20854665	0/0	t0002	367	83	9	26	27	9	12	copy fasta	REXO5	chr16	20801527	20854665
REXO5_chr16_20801527_20854665	0/0	t0003	367	15	15	0	0	0	0	copy fasta	REXO5	chr16	20801527	20854665
REXO5_chr16_20801527_20854665	0/0	t0004	365	3	0	0	3	0	0	copy fasta	REXO5	chr16	20801527	20854665
RFC1_chr4_39282456_39371362	0/0	t0001	1427	151	58	23	52	4	14	copy fasta	RFC1	chr4	39282456	39371362
RFC1_chr4_39282456_39371362	0/1	t0002	1427	95	2	26	50	4	12	copy fasta	RFC1	chr4	39282456	39371362
RFC1_chr4_39282456_39371362	1/0	t0003	1427	14	13	0	0	0	0	copy fasta	RFC1	chr4	39282456	39371362
RFC1_chr4_39282456_39371362	0/0	t0004	1427	6	4	2	0	0	0	copy fasta	RFC1	chr4	39282456	39371362
RFC1_chr4_39282456_39371362	0/0	t0005	1427	2	2	0	0	0	0	copy fasta	RFC1	chr4	39282456	39371362
RFC1_chr4_39282456_39371362	0/0	t0006	1427	2	2	0	0	0	0	copy fasta	RFC1	chr4	39282456	39371362
RFC1_chr4_39282456_39371362	0/0	t0007	1427	2	2	0	0	0	0	copy fasta	RFC1	chr4	39282456	39371362
RFC1_chr4_39282456_39371362	0/0	t0008	1427	1	1	0	0	0	0	copy fasta	RFC1	chr4	39282456	39371362
RFC1_chr4_39282456_39371362	0/0	t0009	1427	1	0	0	1	0	0	copy fasta	RFC1	chr4	39282456	39371362
RFC1_chr4_39282456_39371362	0/0	t0010	1427	1	0	1	0	0	0	copy fasta	RFC1	chr4	39282456	39371362
RFC1_chr4_39282456_39371362	0/0	t0011	1427	1	0	0	1	0	0	copy fasta	RFC1	chr4	39282456	39371362
RFC2_chr7_74226502_74259399	1/1	t0001	621	287	71	60	111	14	29	copy fasta	RFC2	chr7	74226502	74259399
RFC2_chr7_74226502_74259399	0/0	t0002	621	18	16	2	0	0	0	copy fasta	RFC2	chr7	74226502	74259399
RFC2_chr7_74226502_74259399	0/0	t0003	621	12	0	1	11	0	0	copy fasta	RFC2	chr7	74226502	74259399
RFC2_chr7_74226502_74259399	0/0	t0004	621	2	1	0	1	0	0	copy fasta	RFC2	chr7	74226502	74259399
RFC2_chr7_74226502_74259399	0/0	t0005	621	2	0	2	0	0	0	copy fasta	RFC2	chr7	74226502	74259399
RFC2_chr7_74226502_74259399	0/0	t0006	621	2	2	0	0	0	0	copy fasta	RFC2	chr7	74226502	74259399
RFC2_chr7_74226502_74259399	0/0	t0007	621	1	0	1	0	0	0	copy fasta	RFC2	chr7	74226502	74259399
RFC2_chr7_74226502_74259399	0/0	t0008	621	1	0	0	0	0	1	copy fasta	RFC2	chr7	74226502	74259399
RFC2_chr7_74226502_74259399	0/0	t0009	621	1	0	0	1	0	0	copy fasta	RFC2	chr7	74226502	74259399
RFC3_chr13_33813149_33842500	1/1	t0001	1236	251	38	37	138	10	26	copy fasta	RFC3	chr13	33813149	33842500
RFC3_chr13_33813149_33842500	0/0	t0002	1236	145	36	29	70	0	10	copy fasta	RFC3	chr13	33813149	33842500
RFC3_chr13_33813149_33842500	0/0	t0003	1236	6	5	1	0	0	0	copy fasta	RFC3	chr13	33813149	33842500
RFC3_chr13_33813149_33842500	0/0	t0004	1222	5	3	2	0	0	0	copy fasta	RFC3	chr13	33813149	33842500
RFC3_chr13_33813149_33842500	0/0	t0005	1236	3	3	0	0	0	0	copy fasta	RFC3	chr13	33813149	33842500
RFC3_chr13_33813149_33842500	0/0	t0006	1222	2	2	0	0	0	0	copy fasta	RFC3	chr13	33813149	33842500
RFC3_chr13_33813149_33842500	0/0	t0007	1236	1	0	1	0	0	0	copy fasta	RFC3	chr13	33813149	33842500
RFC3_chr13_33813149_33842500	0/0	t0008	1236	1	1	0	0	0	0	copy fasta	RFC3	chr13	33813149	33842500
RFC3_chr13_33813149_33842500	0/0	t0009	1236	1	1	0	0	0	0	copy fasta	RFC3	chr13	33813149	33842500
RFC3_chr13_33813149_33842500	0/0	t0010	1236	1	1	0	0	0	0	copy fasta	RFC3	chr13	33813149	33842500
RFC4_chr3_186784900_186811482	1/1	t0001	274	396	90	68	183	16	37	copy fasta	RFC4	chr3	186784900	186811482
RFC4_chr3_186784900_186811482	0/0	t0002	274	35	1	4	23	2	5	copy fasta	RFC4	chr3	186784900	186811482
RFC4_chr3_186784900_186811482	0/0	t0003	274	1	1	0	0	0	0	copy fasta	RFC4	chr3	186784900	186811482
RFC5_chr12_118011703_118037234	1/1	t0001	1082	417	84	72	201	16	42	copy fasta	RFC5	chr12	118011703	118037234
RFC5_chr12_118011703_118037234	0/0	t0002	1082	4	4	0	0	0	0	copy fasta	RFC5	chr12	118011703	118037234
RFC5_chr12_118011703_118037234	0/0	t0003	1082	4	0	1	0	2	1	copy fasta	RFC5	chr12	118011703	118037234
RFC5_chr12_118011703_118037234	0/0	t0004	1082	3	3	0	0	0	0	copy fasta	RFC5	chr12	118011703	118037234
RFC5_chr12_118011703_118037234	0/0	t0005	1082	2	2	0	0	0	0	copy fasta	RFC5	chr12	118011703	118037234
RFC5_chr12_118011703_118037234	0/0	t0006	1082	2	2	0	0	0	0	copy fasta	RFC5	chr12	118011703	118037234