JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RFC5_chr12_118011703_118037234	0/0	t0007	1082	1	1	0	0	0	0	copy fasta	RFC5	chr12	118011703	118037234
RFC5_chr12_118011703_118037234	0/0	t0008	4583	1	0	0	1	0	0	copy fasta	RFC5	chr12	118011703	118037234
RFC5_chr12_118011703_118037234	0/0	t0009	1082	1	0	0	0	0	1	copy fasta	RFC5	chr12	118011703	118037234
RFC5_chr12_118011703_118037234	0/0	t0010	1082	1	1	0	0	0	0	copy fasta	RFC5	chr12	118011703	118037234
RFC5_chr12_118011703_118037234	0/0	t0011	1082	1	0	1	0	0	0	copy fasta	RFC5	chr12	118011703	118037234
RFC5_chr12_118011703_118037234	0/0	t0012	1082	1	1	0	0	0	0	copy fasta	RFC5	chr12	118011703	118037234
RFESD_chr5_95641777_95663082	1/0	t0001	1950	208	29	43	97	12	26	copy fasta	RFESD	chr5	95641777	95663082
RFESD_chr5_95641777_95663082	0/1	t0002	1952	134	14	20	75	6	18	copy fasta	RFESD	chr5	95641777	95663082
RFESD_chr5_95641777_95663082	0/0	t0003	1952	38	27	10	0	0	1	copy fasta	RFESD	chr5	95641777	95663082
RFESD_chr5_95641777_95663082	0/0	t0004	1952	12	11	1	0	0	0	copy fasta	RFESD	chr5	95641777	95663082
RFESD_chr5_95641777_95663082	0/0	t0005	1952	5	4	1	0	0	0	copy fasta	RFESD	chr5	95641777	95663082
RFESD_chr5_95641777_95663082	0/0	t0006	1950	3	0	0	3	0	0	copy fasta	RFESD	chr5	95641777	95663082
RFESD_chr5_95641777_95663082	0/0	t0007	1950	3	0	0	3	0	0	copy fasta	RFESD	chr5	95641777	95663082
RFESD_chr5_95641777_95663082	0/0	t0008	1952	3	3	0	0	0	0	copy fasta	RFESD	chr5	95641777	95663082
RFESD_chr5_95641777_95663082	0/0	t0009	1952	2	1	1	0	0	0	copy fasta	RFESD	chr5	95641777	95663082
RFESD_chr5_95641777_95663082	0/0	t0010	1952	1	1	0	0	0	0	copy fasta	RFESD	chr5	95641777	95663082
RFESD_chr5_95641777_95663082	0/0	t0011	1950	1	0	0	0	0	1	copy fasta	RFESD	chr5	95641777	95663082
RFFL_chr17_35000990_35068707	0/0	t0001	6120	60	1	5	40	4	10	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	1/1	t0002	6119	56	5	13	23	3	10	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0003	6120	30	2	6	20	1	1	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0004	6120	20	0	0	19	0	1	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0005	6119	13	0	7	5	0	1	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0006	6120	12	0	0	12	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0007	6120	12	0	5	4	3	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0008	6121	12	3	9	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0009	6122	10	1	5	2	1	1	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0010	6120	8	4	2	0	0	2	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0011	6121	7	2	1	3	0	1	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0012	6121	7	5	0	2	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0013	6120	6	0	0	6	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0014	6120	6	6	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0015	6121	6	6	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0016	6119	4	4	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0017	6124	4	2	2	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0018	6120	4	1	0	3	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0019	6120	4	3	1	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0020	6128	4	4	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0021	6121	3	0	0	0	0	3	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0022	6123	3	3	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0023	6118	3	0	0	3	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0024	6120	3	0	0	2	0	1	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0025	6120	3	3	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0026	6121	3	0	0	3	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0027	6120	3	3	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0028	6120	2	2	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0029	6121	2	0	0	0	0	2	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0030	6123	2	2	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0031	6121	2	2	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0032	6119	2	2	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0033	6119	2	0	0	2	0	0	copy fasta	RFFL	chr17	35000990	35068707