JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RFFL_chr17_35000990_35068707	0/0	t0034	6121	2	0	0	1	0	1	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0035	6120	2	2	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0036	6120	2	2	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0037	6121	2	0	0	2	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0038	6121	2	1	0	1	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0039	6121	2	0	0	2	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0040	6119	1	0	1	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0041	6120	1	0	0	1	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0042	6121	1	1	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0043	6123	1	0	0	1	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0044	6120	1	0	0	0	0	1	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0045	6119	1	0	1	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0046	6119	1	0	0	0	0	1	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0047	6119	1	0	0	1	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0048	6119	1	0	0	0	0	1	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0049	6121	1	1	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0050	6119	1	0	1	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0051	6119	1	1	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0052	6121	1	1	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0053	6121	1	0	0	1	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0054	6122	1	0	0	0	0	1	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0055	6122	1	0	0	0	0	1	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0056	6120	1	0	1	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0057	6119	1	0	0	1	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0058	6119	1	1	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0059	6120	1	0	0	0	0	1	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0060	6121	1	0	0	1	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0061	6121	1	0	0	1	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0062	6120	1	0	0	1	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0063	6121	1	1	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0064	6120	1	1	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0065	6120	1	1	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0066	6120	1	0	0	1	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0067	6121	1	1	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0068	6120	1	0	0	1	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0069	6121	1	0	0	1	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0070	6121	1	1	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0071	6120	1	1	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0072	6120	1	1	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0073	6121	1	0	0	1	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0074	6121	1	1	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0075	6121	1	1	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0076	6122	1	1	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0077	6128	1	1	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0078	6128	1	1	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0079	6120	1	1	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0080	6119	1	1	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	t0081	6120	1	0	0	1	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFK_chr9_76380526_76399426	0/0	t0001	2129	176	21	30	98	6	21	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	t0002	2129	122	11	19	81	5	6	copy fasta	RFK	chr9	76380526	76399426