JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RFK_chr9_76380526_76399426	0/0	t0003	2129	40	15	11	0	3	11	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	t0004	2129	27	21	4	0	1	1	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	t0005	2129	6	5	1	0	0	0	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	t0006	2129	4	4	0	0	0	0	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	t0007	2129	3	3	0	0	0	0	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	t0008	2129	3	3	0	0	0	0	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	t0009	2129	3	0	1	0	0	2	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	t0010	2129	2	0	2	0	0	0	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	t0011	2129	2	2	0	0	0	0	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	t0012	2129	2	2	0	0	0	0	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	t0013	2129	2	2	0	0	0	0	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	t0014	2129	2	0	1	0	1	0	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	t0015	2129	1	0	0	1	0	0	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	t0016	2129	1	1	0	0	0	0	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	t0017	2129	1	1	0	0	0	0	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	t0018	2129	1	1	0	0	0	0	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	t0019	2129	1	0	0	0	0	1	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	t0020	2129	1	0	1	0	0	0	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	t0021	2129	1	0	0	0	1	0	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	t0022	2129	1	0	1	0	0	0	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	t0023	2129	1	1	0	0	0	0	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/1	t0024	2129	1	0	0	0	0	0	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	t0025	2129	1	1	0	0	0	0	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	1/0	t0026	2129	1	0	0	0	0	0	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	t0027	2129	1	0	1	0	0	0	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	t0028	2129	1	0	0	0	1	0	copy fasta	RFK	chr9	76380526	76399426
RFLNA_chr12_124290093_124321024	0/1	t0001	1837	104	4	27	54	9	9	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0002	1837	56	19	7	23	2	5	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0003	1837	36	0	10	24	1	1	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0004	1837	35	8	6	17	1	3	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0005	1837	25	6	5	5	1	8	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0006	1837	21	6	2	12	0	1	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0007	1837	17	5	2	5	0	5	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0008	1837	14	2	5	6	0	1	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	1/0	t0009	1837	12	11	0	0	0	0	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0010	1837	7	0	0	4	0	3	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0011	1837	7	0	0	5	0	2	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0012	1837	5	2	2	1	0	0	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0013	1837	5	2	0	1	0	2	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0014	1837	5	5	0	0	0	0	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0015	1837	4	0	4	0	0	0	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0016	1848	4	0	0	4	0	0	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0017	1837	3	3	0	0	0	0	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0018	1837	3	3	0	0	0	0	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0019	1817	3	3	0	0	0	0	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0020	1837	2	0	0	2	0	0	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0021	1837	2	2	0	0	0	0	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0022	1837	2	1	1	0	0	0	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0023	1837	2	2	0	0	0	0	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0024	1837	1	0	0	0	0	1	copy fasta	RFLNA	chr12	124290093	124321024