JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RFLNA_chr12_124290093_124321024	0/0	t0025	1837	1	0	1	0	0	0	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0026	1837	1	0	0	0	0	1	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0027	1837	1	1	0	0	0	0	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0028	1837	1	0	0	1	0	0	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0029	1837	1	0	0	1	0	0	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0030	1837	1	1	0	0	0	0	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0031	1837	1	1	0	0	0	0	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0032	1837	1	0	0	0	0	1	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0033	1837	1	0	0	1	0	0	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0034	1854	1	0	0	0	0	1	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0035	1837	1	0	0	1	0	0	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0036	1837	1	1	0	0	0	0	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	t0037	1848	1	0	0	1	0	0	copy fasta	RFLNA	chr12	124290093	124321024
RFNG_chr17_82042902_82056811	1/0	t0001	870	197	19	26	124	4	23	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	t0002	870	155	48	36	36	13	22	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	t0003	870	55	0	16	37	0	2	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	t0004	870	16	10	6	0	0	0	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	t0005	870	7	7	0	0	0	0	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	t0006	870	7	0	0	7	0	0	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	t0007	870	6	6	0	0	0	0	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/1	t0008	870	3	0	0	0	1	1	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	t0009	870	2	0	2	0	0	0	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	t0010	870	2	0	0	0	0	2	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	t0011	870	2	2	0	0	0	0	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	t0012	870	1	1	0	0	0	0	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	t0013	870	1	0	0	1	0	0	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	t0014	870	1	1	0	0	0	0	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	t0015	870	1	0	0	1	0	0	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	t0016	870	1	0	0	1	0	0	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	t0017	870	1	0	0	1	0	0	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	t0018	870	1	0	0	1	0	0	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	t0019	870	1	0	0	1	0	0	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	t0020	870	1	0	0	1	0	0	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	t0021	870	1	0	0	1	0	0	copy fasta	RFNG	chr17	82042902	82056811
RFPL1_chr22_29433583_29447455	1/1	t0001	543	360	64	54	191	13	36	copy fasta	RFPL1	chr22	29433583	29447455
RFPL1_chr22_29433583_29447455	0/0	t0002	543	40	3	14	9	4	10	copy fasta	RFPL1	chr22	29433583	29447455
RFPL1_chr22_29433583_29447455	0/0	t0003	543	35	19	6	6	1	3	copy fasta	RFPL1	chr22	29433583	29447455
RFPL1_chr22_29433583_29447455	0/0	t0004	543	6	6	0	0	0	0	copy fasta	RFPL1	chr22	29433583	29447455
RFPL1_chr22_29433583_29447455	0/0	t0005	543	2	0	0	2	0	0	copy fasta	RFPL1	chr22	29433583	29447455
RFPL1_chr22_29433583_29447455	0/0	t0006	543	1	0	0	0	0	1	copy fasta	RFPL1	chr22	29433583	29447455
RFPL2_chr22_32185438_32210073	1/1	t0001	801	213	17	36	129	6	23	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	t0002	801	62	23	20	7	5	7	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	t0003	801	56	16	9	20	2	9	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	t0004	801	31	28	3	0	0	0	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	t0005	801	14	12	0	1	0	1	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	t0006	801	10	0	6	0	1	3	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	t0007	801	2	0	0	0	0	2	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	t0008	801	1	0	0	0	0	1	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	t0009	801	1	0	1	0	0	0	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	t0010	801	1	0	1	0	0	0	copy fasta	RFPL2	chr22	32185438	32210073