JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RFPL2_chr22_32185438_32210073	0/0	t0011	801	1	0	0	1	0	0	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	t0012	801	1	0	0	1	0	0	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	t0013	801	1	0	0	1	0	0	copy fasta	RFPL2	chr22	32185438	32210073
RFPL3_chr22_32352867_32366161	1/0	t0001	535	227	63	54	69	14	26	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/0	t0002	534	92	3	5	77	0	7	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/0	t0003	535	41	3	6	26	2	4	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/1	t0004	535	25	1	9	9	0	5	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/0	t0005	535	23	6	8	3	2	4	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/0	t0006	535	7	5	2	0	0	0	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/0	t0007	535	3	3	0	0	0	0	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/0	t0008	535	3	0	0	2	0	1	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/0	t0009	535	2	2	0	0	0	0	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/0	t0010	535	1	0	0	0	0	1	copy fasta	RFPL3	chr22	32352867	32366161
RFPL4AL1_chr19_55764118_55778420	0/0	t0000	0	1	0	0	0	1	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	1/0	t0001	309	225	28	45	124	9	18	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	t0002	309	123	5	17	73	5	23	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	t0003	309	75	59	8	6	0	2	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	t0004	309	44	1	7	32	1	3	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	t0005	10315	3	0	0	3	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	t0006	309	2	2	0	0	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	t0007	68	1	0	1	0	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	t0008	10313	1	0	0	1	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	t0009	309	1	0	0	1	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	t0010	309	1	1	0	0	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4A_chr19_55754097_55768421	0/0	t0000	0	3	0	0	0	0	3	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	1/1	t0001	335	338	46	63	176	15	36	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	t0002	335	51	4	12	28	3	4	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	t0003	335	48	25	5	13	0	5	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	t0004	335	5	5	0	0	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	t0005	335	4	0	0	4	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	t0006	335	3	3	0	0	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	t0007	335	2	2	0	0	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	t0008	335	2	2	0	0	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	t0009	80	2	0	0	2	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	t0010	335	1	1	0	0	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	t0011	10337	1	0	0	1	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	t0012	335	1	1	0	0	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	t0013	335	1	1	0	0	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4B_chr6_112342330_112356294	1/1	t0001	1107	249	64	27	123	9	24	copy fasta	RFPL4B	chr6	112342330	112356294
RFPL4B_chr6_112342330_112356294	0/0	t0002	1105	103	15	26	49	3	10	copy fasta	RFPL4B	chr6	112342330	112356294
RFPL4B_chr6_112342330_112356294	0/0	t0003	1107	46	15	12	9	2	8	copy fasta	RFPL4B	chr6	112342330	112356294
RFPL4B_chr6_112342330_112356294	0/0	t0004	1107	18	1	12	5	0	0	copy fasta	RFPL4B	chr6	112342330	112356294
RFPL4B_chr6_112342330_112356294	0/0	t0005	1107	13	0	0	13	0	0	copy fasta	RFPL4B	chr6	112342330	112356294
RFPL4B_chr6_112342330_112356294	0/0	t0006	1105	9	0	5	4	0	0	copy fasta	RFPL4B	chr6	112342330	112356294
RFPL4B_chr6_112342330_112356294	0/0	t0007	1107	4	1	2	0	0	1	copy fasta	RFPL4B	chr6	112342330	112356294
RFPL4B_chr6_112342330_112356294	0/0	t0008	1107	4	0	0	4	0	0	copy fasta	RFPL4B	chr6	112342330	112356294
RFPL4B_chr6_112342330_112356294	0/0	t0009	1107	3	0	1	0	2	0	copy fasta	RFPL4B	chr6	112342330	112356294
RFPL4B_chr6_112342330_112356294	0/0	t0010	1107	2	1	1	0	0	0	copy fasta	RFPL4B	chr6	112342330	112356294
RFPL4B_chr6_112342330_112356294	0/0	t0011	1107	2	0	0	2	0	0	copy fasta	RFPL4B	chr6	112342330	112356294
RFPL4B_chr6_112342330_112356294	0/0	t0012	1105	1	0	0	0	0	1	copy fasta	RFPL4B	chr6	112342330	112356294