JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RFPL4B_chr6_112342330_112356294	0/0	t0013	1107	1	0	0	1	0	0	copy fasta	RFPL4B	chr6	112342330	112356294
RFPL4B_chr6_112342330_112356294	0/0	t0014	1107	1	0	0	0	0	1	copy fasta	RFPL4B	chr6	112342330	112356294
RFPL4B_chr6_112342330_112356294	0/0	t0015	1107	1	1	0	0	0	0	copy fasta	RFPL4B	chr6	112342330	112356294
RFPL4B_chr6_112342330_112356294	0/0	t0016	1105	1	0	0	0	0	1	copy fasta	RFPL4B	chr6	112342330	112356294
RFT1_chr3_53083483_53135435	0/0	t0001	3456	130	9	34	66	5	16	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	t0002	3456	52	23	8	16	1	4	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/1	t0003	3456	49	1	12	23	6	6	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	t0004	3456	21	0	5	2	0	14	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	1/0	t0005	3456	20	15	4	0	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	t0006	3456	15	15	0	0	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	t0007	3456	14	14	0	0	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	t0008	3456	5	4	1	0	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	t0009	3456	2	2	0	0	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	t0010	3456	2	0	2	0	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	t0011	3456	1	0	0	0	0	1	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	t0012	3456	1	1	0	0	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	t0013	3456	1	0	0	1	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	t0014	3456	1	0	0	0	0	1	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	t0015	3456	1	1	0	0	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	t0016	3456	1	1	0	0	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	t0017	3456	1	1	0	0	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	t0018	3456	1	1	0	0	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	t0019	3456	1	0	0	1	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	t0020	3456	1	1	0	0	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	t0021	3456	1	0	1	0	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	t0022	3456	1	0	0	1	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	t0023	3456	1	1	0	0	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	t0024	3456	1	0	1	0	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFTN1_chr3_16310845_16518699	1/1	t0001	1250	124	23	26	57	2	14	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	t0002	1250	83	6	21	44	3	9	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	t0003	1250	23	14	6	0	2	1	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	t0004	1250	15	14	1	0	0	0	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	t0005	1250	7	0	0	7	0	0	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	t0006	1250	5	5	0	0	0	0	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	t0007	1250	4	1	3	0	0	0	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	t0008	1250	2	0	0	2	0	0	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	t0009	1250	2	2	0	0	0	0	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	t0010	1250	1	1	0	0	0	0	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	t0011	1250	1	0	0	0	1	0	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	t0012	1250	1	0	1	0	0	0	copy fasta	RFTN1	chr3	16310845	16518699
RFTN2_chr2_197563224_197680587	0/0	t0001	3914	71	0	25	38	3	5	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0002	3916	70	8	24	26	4	8	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/1	t0003	3915	59	18	10	28	2	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	1/0	t0004	3914	26	10	0	13	0	2	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0005	3916	17	0	0	17	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0006	3916	11	6	1	2	1	1	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0007	3917	7	2	1	3	0	1	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0008	3916	5	5	0	0	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0009	3915	4	4	0	0	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0010	3915	4	4	0	0	0	0	copy fasta	RFTN2	chr2	197563224	197680587