JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RFTN2_chr2_197563224_197680587	0/0	t0011	3915	4	4	0	0	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0012	3914	4	4	0	0	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0013	3914	3	3	0	0	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0014	3915	2	0	0	2	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0015	3916	2	2	0	0	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0016	3917	2	0	0	2	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0017	3916	2	2	0	0	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0018	3916	1	0	0	0	0	1	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0019	3912	1	1	0	0	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0020	3915	1	0	0	1	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0021	3916	1	1	0	0	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0022	3916	1	0	0	1	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0023	3916	1	1	0	0	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0024	3916	1	0	0	1	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0025	3914	1	0	0	1	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0026	3914	1	1	0	0	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0027	3915	1	1	0	0	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0028	3915	1	0	1	0	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0029	3915	1	1	0	0	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0030	3915	1	1	0	0	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0031	3915	1	1	0	0	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0032	3914	1	0	1	0	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0033	3914	1	0	1	0	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0034	3915	1	0	0	0	0	1	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0035	3915	1	0	0	0	0	1	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	t0036	3914	1	0	0	1	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFWD3_chr16_74616399_74671877	0/0	t0001	2648	112	25	16	56	8	7	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0002	2672	89	3	12	59	1	14	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	1/0	t0003	2624	70	10	16	38	2	3	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0004	2624	24	3	15	0	2	4	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/1	t0005	2624	20	7	3	5	1	3	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0006	2649	11	6	0	4	0	1	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0007	2624	8	0	3	0	1	4	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0008	2696	8	0	1	7	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0009	2672	6	0	0	6	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0010	2648	5	5	0	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0011	2624	4	4	0	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0012	2624	3	0	2	0	0	1	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0013	2672	3	2	1	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0014	2648	3	3	0	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0015	2720	2	0	1	1	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0016	2672	2	0	0	0	0	2	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0017	2672	2	0	0	2	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0018	2648	2	1	1	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0019	2648	1	0	0	0	0	1	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0020	2624	1	0	1	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0021	2624	1	0	0	0	0	1	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0022	2624	1	0	1	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0023	2624	1	1	0	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0024	2648	1	1	0	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877