JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RFWD3_chr16_74616399_74671877	0/0	t0025	2720	1	0	0	1	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0026	2696	1	0	0	1	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0027	2696	1	0	1	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0028	2696	1	0	0	1	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0029	2672	1	1	0	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0030	2672	1	0	0	1	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0031	2672	1	0	1	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0032	2671	1	0	0	1	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0033	2672	1	0	0	1	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0034	2672	1	1	0	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0035	2672	1	0	0	0	0	1	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0036	2672	1	0	0	1	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0037	2672	1	1	0	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0038	2648	1	1	0	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0039	2648	1	1	0	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0040	2648	1	1	0	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0041	2649	1	1	0	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0042	2647	1	0	0	1	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0043	2648	1	0	0	1	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0044	2648	1	1	0	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0045	2648	1	0	1	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0046	2648	1	1	0	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0047	2648	1	1	0	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0048	2648	1	1	0	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0049	2648	1	1	0	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0050	2624	1	0	0	0	1	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0051	2624	1	1	0	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0052	2624	1	1	0	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0053	2693	1	0	0	1	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0054	2648	1	1	0	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0055	2672	1	0	0	1	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	t0056	2672	1	0	0	1	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFX1_chr19_13956530_14011320	1/1	t0001	1436	156	25	40	53	12	24	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	t0002	1436	72	28	9	22	2	11	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	t0003	1434	5	5	0	0	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	t0004	1436	5	4	1	0	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	t0005	1435	5	2	0	2	0	1	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	t0006	1436	4	4	0	0	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	t0007	1436	3	3	0	0	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	t0008	1436	3	0	0	3	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	t0009	1439	3	3	0	0	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	t0010	1436	2	2	0	0	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	t0011	1436	2	2	0	0	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	t0012	1436	2	2	0	0	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	t0013	1436	2	0	0	2	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	t0014	1436	2	2	0	0	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	t0015	1436	1	1	0	0	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	t0016	1436	1	1	0	0	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	t0017	1435	1	1	0	0	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	t0018	1436	1	1	0	0	0	0	copy fasta	RFX1	chr19	13956530	14011320